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    • GAMclust

      Public
      GAM-clustering: Metabolic Modules Derivig From RNAseq Data
      R
      Other
      0210Updated Jul 9, 2025Jul 9, 2025
    • GADMA

      Public
      Genetic Algorithm for Demographic Model Analysis
      Python
      Other
      155180Updated Jun 28, 2025Jun 28, 2025
    • samovar

      Public
      Algorithms package for generating model metagenomes with specified properties
      Python
      MIT License
      0600Updated Jun 11, 2025Jun 11, 2025
    • LinSeed

      Public
      Linseed: LINear Subspace identification for gene Expresion Deconvolution
      R
      MIT License
      103060Updated May 7, 2025May 7, 2025
    • metafx

      Public
      MetaFX – library for feature extraction from whole-genome metagenome sequencing data
      Shell
      MIT License
      11100Updated Feb 17, 2025Feb 17, 2025
    • HTML
      0000Updated Feb 13, 2025Feb 13, 2025
    • parallel rearrangements caller
      Python
      MIT License
      2420Updated Oct 6, 2024Oct 6, 2024
    • mwcsr

      Public
      An R package for solving maximum-weight connected subrgaph problem and it's variants
      C++
      Other
      4701Updated Sep 9, 2024Sep 9, 2024
    • metafast

      Public
      Fast metagenome analysis toolkit
      Java
      MIT License
      102601Updated Sep 3, 2024Sep 3, 2024
    • HiCT

      Public
      Combines all HiCT-related repositories as submodules
      Dockerfile
      MIT License
      0210Updated Jun 26, 2024Jun 26, 2024
    • Library for interaction with Hi-C contact maps in HDF5 format
      Python
      MIT License
      0000Updated Jun 26, 2024Jun 26, 2024
    • HiCT_JVM

      Public
      Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.
      Java
      MIT License
      0170Updated Jun 26, 2024Jun 26, 2024
    • Python
      MIT License
      0000Updated Jun 26, 2024Jun 26, 2024
    • Utilities for interaction with HiCT library and data format.
      Python
      MIT License
      0010Updated Jun 26, 2024Jun 26, 2024
    • TypeScript
      MIT License
      0000Updated Jun 26, 2024Jun 26, 2024
    • Single Cell Navigator
      JavaScript
      2502Updated May 15, 2024May 15, 2024
    • BandageNG

      Public
      a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
      C++
      GNU General Public License v3.0
      105100Updated May 12, 2024May 12, 2024
    • gatom

      Public
      Finding an Active Metabolic Module in Atom Transition Network
      R
      Other
      4710Updated Apr 30, 2024Apr 30, 2024
    • Java
      MIT License
      91822Updated Jan 16, 2024Jan 16, 2024
    • Component for finding decomposition sets and estimating hardness of SAT instances.
      Python
      MIT License
      0400Updated Jan 15, 2024Jan 15, 2024
    • HTML
      0300Updated Sep 15, 2023Sep 15, 2023
    • GScour

      Public
      Genome-wide detection of positive selection
      Python
      0900Updated Jun 6, 2023Jun 6, 2023
    • evoguess

      Public
      Component EvoGuess v2.1 for finding decomposition sets and estimating hardness of SAT instances.
      Python
      MIT License
      1200Updated Jun 4, 2023Jun 4, 2023
    • metafx_old

      Public archive
      Jupyter Notebook
      MIT License
      0100Updated May 23, 2023May 23, 2023
    • The adjoint-state method for demographic inference
      Python
      0000Updated May 21, 2023May 21, 2023
    • Solver for SGMWCS and GMWCS problems
      Java
      Other
      1300Updated May 16, 2023May 16, 2023
    • ITMO_FS

      Public
      Feature selection library in python
      Python
      BSD 3-Clause "New" or "Revised" License
      3814775Updated Feb 22, 2023Feb 22, 2023
    • SCNPrep

      Public
      R
      2000Updated Feb 21, 2023Feb 21, 2023
    • Probabilistic backdoor trees for SAT solving
      C++
      0100Updated Dec 1, 2022Dec 1, 2022
    • scNavigator processing pipeline for scRNA-seq data
      Python
      MIT License
      1300Updated Nov 24, 2022Nov 24, 2022
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