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Merged
merged 122 commits into from
Sep 18, 2024
Merged

Release v2.3.0 #97

merged 122 commits into from
Sep 18, 2024

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alexzwanenburg
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@alexzwanenburg
Create new feature backend
10f030d 
We start with the more difficult RLM case to get the basic structure correct.
@alexzwanenburg
Update histogram.py
9138fa7
@alexzwanenburg
Further work on feature back-end.
bab6805
@alexzwanenburg
Move rep utility function from _featuresets.utilities to _features.ut…
cedcb1b 
…ilities
@alexzwanenburg
WIP on feature backend
67c0d9c
@alexzwanenburg
Further WIP on feature backend.
3c91e54 
We now finished basic texture matrix handling.
@alexzwanenburg
Fixed missing semicolon.
f2fb56d
@alexzwanenburg
Added RLM-LRE and RLM-LGRE features.
13ead79
@alexzwanenburg
Moved code related to the RLM matrix to rlm_matrix.py
f9ef84a
@alexzwanenburg
Added remaining RLM features
76333b0
@alexzwanenburg
WIP on integrating features into the workflow.
9c6d311
@alexzwanenburg
Integrated conversion to feature tables.
395eb58
@alexzwanenburg
Debugging RLM.
19a757b
@alexzwanenburg
DataFrame objects are now correctly generated from feature objects.
48074d5
@alexzwanenburg
Matrices are now correctly initialised prior to processing
28c5715
@alexzwanenburg
Feature order in class_dict is now maintained.
2d352e7
@alexzwanenburg
Allow for passing additional values to set_values_from_matrix
e2d0a8f
@alexzwanenburg
Added _lookup_intensity helper method.
e3ba710
@alexzwanenburg
Initial implementation of MatrixCM
a3827f3
@alexzwanenburg
Initial implementations for CM-features.
31f4e00
@alexzwanenburg
CM features can now be passed to the workflow.
1c803ee
@alexzwanenburg
Work in progress on CM features.
d1d57ac
@alexzwanenburg
Temporary changes to test.
882f904
@alexzwanenburg
Added more features.
2558da0
@alexzwanenburg
Added remaining CM features.
e46f9c3
@alexzwanenburg
CM features can now be computed correctly.
163e527
@alexzwanenburg
Stubs for size zone matrix features.
81e75b1
@alexzwanenburg
Change signature of Matrix.compute to facilitate size zone matrices
5b28413
@alexzwanenburg
Implemented MatrixSZM.compute method.
09c5802
@alexzwanenburg
Update MatrixSZM.set_values_from_matrix
8ee4c87
@alexzwanenburg
Added tests for exporting metadata from MG and CR data.
a0539a1
@alexzwanenburg
Update documentation to show off planar imaging.
e8c3b0c
@alexzwanenburg
Update NEWS.md
f638f73
@alexzwanenburg
Early work on replacing by_slice by separate_slices attribute.
d930344
@alexzwanenburg
Replaced by_slice by separate_slices in image filters.
3e1dd67
@alexzwanenburg
Update by_slice in interpolate and related functions.
b74942b
@alexzwanenburg
Adapted use of by_slice by alter_mask and underlying functions.
f82f103
@alexzwanenburg
Updated by_slice in randomise_mask
0dc7445
@alexzwanenburg
Updated by_slice in split_masks
a73b086
@alexzwanenburg
Updated by_slice in decimate
a3d6110
@alexzwanenburg
Update by_slice in dilate.
6e9614c
@alexzwanenburg
Checks on image modalities are now conducted correctly in flat files.
f9c1638
@alexzwanenburg
PET modality is now consistently named "pt" for DICOM objects.
99a071b
@alexzwanenburg
Fixed outdated tests due to change in error message.
bf96ba6
@alexzwanenburg
Fixes numpy deprecation warnings related to np.cross.
e3dd3ae
@alexzwanenburg
Implementation for processing DCE-MR images.
d1bd96e
@alexzwanenburg
Updated processing of SEG files to be more consistent with multi-fram…
af5debb 
…e images.
@alexzwanenburg
Updated test_dce_mr_image_methods test.
1a2081b
@alexzwanenburg
DCE exports no additional parameters.
febb54c
@alexzwanenburg
Updated documentation.
d33e7a7
@alexzwanenburg alexzwanenburg added the release Version release label Sep 18, 2024
@alexzwanenburg alexzwanenburg added this to the v2.3.0 milestone Sep 18, 2024
@alexzwanenburg alexzwanenburg self-assigned this Sep 18, 2024
@alexzwanenburg alexzwanenburg merged commit 480e1d7 into master Sep 18, 2024
9 checks passed
@alexzwanenburg alexzwanenburg deleted the v2.3.0 branch September 18, 2024 14:02
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@alexzwanenburg
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