oncoray · alexzwanenburg · Jun 23, 2024 · Jun 7, 2024 · Jun 7, 2024 · Jun 7, 2024
diff --git a/.github/workflows/auto-test-dependencies_timed.yml b/.github/workflows/auto-test-dependencies_timed.yml
@@ -3,7 +3,7 @@
 
 # Automated tests are run at 6:30 UTC on the first and fifteenth day of each month.
 
-name: Run automated tests on multiple platforms to detect dependency issues
+name: build-check
 
 on:
   workflow_dispatch:

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,9 @@
+# Version 2.2.4
+
+## Fixes
+
+- Masks can now be plotted in images without causing an error when using `matplotlib` version 3.9.0 or later.
+
 # Version 2.2.3
 
 ## Minor changes
@@ -7,7 +13,7 @@
 
 - MIRP now checks whether there are potential problems between the frames of reference of image and mask files.
 
-# Fixes
+## Fixes
 
 - Fixed an error that occurs when attempting to create a deep copy `ImageITKFile` objects.
 

diff --git a/README.md b/README.md
@@ -1,14 +1,35 @@
 <img src="https://raw.githubusercontent.com/oncoray/mirp/master/icon/mirp.svg" align="right" width="120"/>
 
+![GitHub License](https://img.shields.io/github/license/oncoray/mirp)
+![PyPI - Python Version](https://img.shields.io/pypi/pyversions/mirp)
+[![PyPI - Version](https://img.shields.io/pypi/v/mirp)](https://pypi.org/project/mirp/)
+![GitHub Actions Workflow Status](https://img.shields.io/github/actions/workflow/status/oncoray/mirp/auto-test-dependencies_timed.yml)
+[![JOSS](https://joss.theoj.org/papers/165c85b1ecad891550a21b12c8b2e577/status.svg)](https://joss.theoj.org/papers/165c85b1ecad891550a21b12c8b2e577)
+
 # Medical Image Radiomics Processor
 
-Medical Image Radiomics Processor (MIRP) is a python package for medical image analysis that is compliant with the 
-reference standards of the Image Biomarker Standardisation Initiative (IBSI). MIRP focuses on radiomics applications 
-and supports computation of features for conventional radiomics and image processing for deep-learning applications.
+MIRP is a python package for quantitative analysis of medical images. It focuses on processing images for integration
+with radiomics workflows. These workflows either use quantitative features computed using MIRP, or directly use MIRP
+to process images as input for neural networks and other deep learning models.
+
+MIRP offers the following main functionality:
+
+- [Extract and collect metadata](https://oncoray.github.io/mirp/image_metadata.html) from medical images.
+- [Find and collect labels or names](https://oncoray.github.io/mirp/mask_labels.html) of regions of interest from image 
+  segmentations.
+- [Compute quantitative features](https://oncoray.github.io/mirp/quantitative_image_analysis.html) from regions of interest in medical images.
+- [Process images for deep learning](https://oncoray.github.io/mirp/deep_learning.html).
+
+## Tutorials
+
+We currently offer the following tutorials:
+
+- [Computing quantitative features from MR images](https://oncoray.github.io/mirp/tutorial_compute_radiomics_features_mr.html)
+- [Applying filters to images](https://oncoray.github.io/mirp/tutorial_apply_image_filter.html)
 
-## Documentation and tutorials
+## Documentation
 
-Documentation and tutorials can be found here: https://oncoray.github.io/mirp/
+Documentation can be found here: https://oncoray.github.io/mirp/
 
 ## Supported Python and OS
 

diff --git a/docs/.buildinfo b/docs/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: b7d3c05f6bec86800f0a1510ac564b73
+config: 92a05a2b300f0adee19d846b9e8f30a1
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/...ages/tutorial_apply_image_filter_13_0.png → ...ages/tutorial_apply_image_filter_14_0.png b/...ages/tutorial_apply_image_filter_13_0.png → ...ages/tutorial_apply_image_filter_14_0.png
diff --git a/...ages/tutorial_apply_image_filter_15_0.png → ...ages/tutorial_apply_image_filter_16_0.png b/...ages/tutorial_apply_image_filter_15_0.png → ...ages/tutorial_apply_image_filter_16_0.png
diff --git a/...ages/tutorial_apply_image_filter_17_0.png → ...ages/tutorial_apply_image_filter_18_0.png b/...ages/tutorial_apply_image_filter_17_0.png → ...ages/tutorial_apply_image_filter_18_0.png
diff --git a/...ages/tutorial_apply_image_filter_19_0.png → ...ages/tutorial_apply_image_filter_20_0.png b/...ages/tutorial_apply_image_filter_19_0.png → ...ages/tutorial_apply_image_filter_20_0.png
diff --git a/...ages/tutorial_apply_image_filter_21_0.png → ...ages/tutorial_apply_image_filter_22_0.png b/...ages/tutorial_apply_image_filter_21_0.png → ...ages/tutorial_apply_image_filter_22_0.png
diff --git a/...ages/tutorial_apply_image_filter_23_0.png → ...ages/tutorial_apply_image_filter_24_0.png b/...ages/tutorial_apply_image_filter_23_0.png → ...ages/tutorial_apply_image_filter_24_0.png
diff --git a/...ages/tutorial_apply_image_filter_25_0.png → ...ages/tutorial_apply_image_filter_26_0.png b/...ages/tutorial_apply_image_filter_25_0.png → ...ages/tutorial_apply_image_filter_26_0.png
diff --git a/...mages/tutorial_apply_image_filter_7_0.png → ...mages/tutorial_apply_image_filter_8_0.png b/...mages/tutorial_apply_image_filter_7_0.png → ...mages/tutorial_apply_image_filter_8_0.png
diff --git a/docs/_images/tutorial_compute_radiomics_features_mr_7_0.png b/docs/_images/tutorial_compute_radiomics_features_mr_7_0.png
diff --git a/docs/_images/tutorial_compute_radiomics_features_mr_8_0.png b/docs/_images/tutorial_compute_radiomics_features_mr_8_0.png
diff --git a/docs/_modules/index.html b/docs/_modules/index.html
@@ -3,8 +3,8 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Overview: module code &mdash; mirp 2.2.3 documentation</title>
-      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=80d5e7a1" />
+  <title>Overview: module code &mdash; mirp 2.2.4 documentation</title>
+      <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=92fd9be5" />
       <link rel="stylesheet" type="text/css" href="../_static/css/theme.css?v=19f00094" />
 
 
@@ -14,7 +14,7 @@
 
         <script src="../_static/jquery.js?v=5d32c60e"></script>
         <script src="../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../_static/documentation_options.js?v=85e56e6b"></script>
+        <script src="../_static/documentation_options.js?v=4e6cfea6"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
         <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
@@ -52,7 +52,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../tutorial_compute_radiomics_features_mr.html">Tutorial: Computing radiomics features</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../tutorial_apply_image_filter.html">Tutorial: Applying image filters</a></li>
 </ul>
-<p class="caption" role="heading"><span class="caption-text">Deep Dive</span></p>
+<p class="caption" role="heading"><span class="caption-text">Documentation and API</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../image_mask_import.html">Configure image and mask import</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../configuration.html">Configure the image processing and feature extraction workflow</a></li>

diff --git a/docs/_modules/mirp/data_import/import_image_and_mask.html b/docs/_modules/mirp/data_import/import_image_and_mask.html
@@ -3,8 +3,8 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>mirp.data_import.import_image_and_mask &mdash; mirp 2.2.3 documentation</title>
-      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
+  <title>mirp.data_import.import_image_and_mask &mdash; mirp 2.2.4 documentation</title>
+      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=92fd9be5" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
 
 
@@ -14,7 +14,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=85e56e6b"></script>
+        <script src="../../../_static/documentation_options.js?v=4e6cfea6"></script>
         <script src="../../../_static/doctools.js?v=888ff710"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
         <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
@@ -52,7 +52,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../../../tutorial_compute_radiomics_features_mr.html">Tutorial: Computing radiomics features</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../tutorial_apply_image_filter.html">Tutorial: Applying image filters</a></li>
 </ul>
-<p class="caption" role="heading"><span class="caption-text">Deep Dive</span></p>
+<p class="caption" role="heading"><span class="caption-text">Documentation and API</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../image_mask_import.html">Configure image and mask import</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../configuration.html">Configure the image processing and feature extraction workflow</a></li>

diff --git a/docs/_modules/mirp/deep_learning_preprocessing.html b/docs/_modules/mirp/deep_learning_preprocessing.html
@@ -3,8 +3,8 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>mirp.deep_learning_preprocessing &mdash; mirp 2.2.3 documentation</title>
-      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
+  <title>mirp.deep_learning_preprocessing &mdash; mirp 2.2.4 documentation</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=92fd9be5" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
 
 
@@ -14,7 +14,7 @@
 
         <script src="../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=85e56e6b"></script>
+        <script src="../../_static/documentation_options.js?v=4e6cfea6"></script>
         <script src="../../_static/doctools.js?v=888ff710"></script>
         <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
         <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
@@ -52,7 +52,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../../tutorial_compute_radiomics_features_mr.html">Tutorial: Computing radiomics features</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../tutorial_apply_image_filter.html">Tutorial: Applying image filters</a></li>
 </ul>
-<p class="caption" role="heading"><span class="caption-text">Deep Dive</span></p>
+<p class="caption" role="heading"><span class="caption-text">Documentation and API</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../image_mask_import.html">Configure image and mask import</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../configuration.html">Configure the image processing and feature extraction workflow</a></li>

diff --git a/docs/_modules/mirp/extract_features_and_images.html b/docs/_modules/mirp/extract_features_and_images.html
@@ -3,8 +3,8 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>mirp.extract_features_and_images &mdash; mirp 2.2.3 documentation</title>
-      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
+  <title>mirp.extract_features_and_images &mdash; mirp 2.2.4 documentation</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=92fd9be5" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
 
 
@@ -14,7 +14,7 @@
 
         <script src="../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=85e56e6b"></script>
+        <script src="../../_static/documentation_options.js?v=4e6cfea6"></script>
         <script src="../../_static/doctools.js?v=888ff710"></script>
         <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
         <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
@@ -52,7 +52,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../../tutorial_compute_radiomics_features_mr.html">Tutorial: Computing radiomics features</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../tutorial_apply_image_filter.html">Tutorial: Applying image filters</a></li>
 </ul>
-<p class="caption" role="heading"><span class="caption-text">Deep Dive</span></p>
+<p class="caption" role="heading"><span class="caption-text">Documentation and API</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../image_mask_import.html">Configure image and mask import</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../configuration.html">Configure the image processing and feature extraction workflow</a></li>

diff --git a/docs/_modules/mirp/extract_image_parameters.html b/docs/_modules/mirp/extract_image_parameters.html
@@ -3,8 +3,8 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>mirp.extract_image_parameters &mdash; mirp 2.2.3 documentation</title>
-      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
+  <title>mirp.extract_image_parameters &mdash; mirp 2.2.4 documentation</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=92fd9be5" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
 
 
@@ -14,7 +14,7 @@
 
         <script src="../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=85e56e6b"></script>
+        <script src="../../_static/documentation_options.js?v=4e6cfea6"></script>
         <script src="../../_static/doctools.js?v=888ff710"></script>
         <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
         <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
@@ -52,7 +52,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../../tutorial_compute_radiomics_features_mr.html">Tutorial: Computing radiomics features</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../tutorial_apply_image_filter.html">Tutorial: Applying image filters</a></li>
 </ul>
-<p class="caption" role="heading"><span class="caption-text">Deep Dive</span></p>
+<p class="caption" role="heading"><span class="caption-text">Documentation and API</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../image_mask_import.html">Configure image and mask import</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../configuration.html">Configure the image processing and feature extraction workflow</a></li>

diff --git a/docs/_modules/mirp/extract_mask_labels.html b/docs/_modules/mirp/extract_mask_labels.html
@@ -3,8 +3,8 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>mirp.extract_mask_labels &mdash; mirp 2.2.3 documentation</title>
-      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=80d5e7a1" />
+  <title>mirp.extract_mask_labels &mdash; mirp 2.2.4 documentation</title>
+      <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=92fd9be5" />
       <link rel="stylesheet" type="text/css" href="../../_static/css/theme.css?v=19f00094" />
 
 
@@ -14,7 +14,7 @@
 
         <script src="../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../_static/documentation_options.js?v=85e56e6b"></script>
+        <script src="../../_static/documentation_options.js?v=4e6cfea6"></script>
         <script src="../../_static/doctools.js?v=888ff710"></script>
         <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
         <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
@@ -52,7 +52,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../../tutorial_compute_radiomics_features_mr.html">Tutorial: Computing radiomics features</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../tutorial_apply_image_filter.html">Tutorial: Applying image filters</a></li>
 </ul>
-<p class="caption" role="heading"><span class="caption-text">Deep Dive</span></p>
+<p class="caption" role="heading"><span class="caption-text">Documentation and API</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../image_mask_import.html">Configure image and mask import</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../configuration.html">Configure the image processing and feature extraction workflow</a></li>

diff --git a/docs/_modules/mirp/settings/feature_parameters.html b/docs/_modules/mirp/settings/feature_parameters.html
@@ -3,8 +3,8 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>mirp.settings.feature_parameters &mdash; mirp 2.2.3 documentation</title>
-      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
+  <title>mirp.settings.feature_parameters &mdash; mirp 2.2.4 documentation</title>
+      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=92fd9be5" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
 
 
@@ -14,7 +14,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=85e56e6b"></script>
+        <script src="../../../_static/documentation_options.js?v=4e6cfea6"></script>
         <script src="../../../_static/doctools.js?v=888ff710"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
         <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
@@ -52,7 +52,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../../../tutorial_compute_radiomics_features_mr.html">Tutorial: Computing radiomics features</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../tutorial_apply_image_filter.html">Tutorial: Applying image filters</a></li>
 </ul>
-<p class="caption" role="heading"><span class="caption-text">Deep Dive</span></p>
+<p class="caption" role="heading"><span class="caption-text">Documentation and API</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../image_mask_import.html">Configure image and mask import</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../configuration.html">Configure the image processing and feature extraction workflow</a></li>

diff --git a/docs/_modules/mirp/settings/general_parameters.html b/docs/_modules/mirp/settings/general_parameters.html
@@ -3,8 +3,8 @@
 <head>
   <meta charset="utf-8" />
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>mirp.settings.general_parameters &mdash; mirp 2.2.3 documentation</title>
-      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=80d5e7a1" />
+  <title>mirp.settings.general_parameters &mdash; mirp 2.2.4 documentation</title>
+      <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=92fd9be5" />
       <link rel="stylesheet" type="text/css" href="../../../_static/css/theme.css?v=19f00094" />
 
 
@@ -14,7 +14,7 @@
 
         <script src="../../../_static/jquery.js?v=5d32c60e"></script>
         <script src="../../../_static/_sphinx_javascript_frameworks_compat.js?v=2cd50e6c"></script>
-        <script src="../../../_static/documentation_options.js?v=85e56e6b"></script>
+        <script src="../../../_static/documentation_options.js?v=4e6cfea6"></script>
         <script src="../../../_static/doctools.js?v=888ff710"></script>
         <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
         <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
@@ -52,7 +52,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../../../tutorial_compute_radiomics_features_mr.html">Tutorial: Computing radiomics features</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../tutorial_apply_image_filter.html">Tutorial: Applying image filters</a></li>
 </ul>
-<p class="caption" role="heading"><span class="caption-text">Deep Dive</span></p>
+<p class="caption" role="heading"><span class="caption-text">Documentation and API</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../../image_mask_import.html">Configure image and mask import</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../../configuration.html">Configure the image processing and feature extraction workflow</a></li>