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Merged
merged 57 commits into from
May 15, 2024
Merged

Version 2.2.2 update #86

merged 57 commits into from
May 15, 2024

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alexzwanenburg
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@alexzwanenburg
Fixed grammar and descriptions.
f966328
@alexzwanenburg
Work in progress on new tutorial.
e3b0a84
@alexzwanenburg
New chest CT example dataset.
f5e3bb1
@alexzwanenburg
Update NEWS.md
ade2fd2
@alexzwanenburg
Add link to dataset.
d41da9a
@alexzwanenburg
Truncate out-of-volume slice_id to the nearest valid value.
104ff8f 
A warning is raised. #82
@alexzwanenburg
Add instructions for finding the installed version of MIRP.
c56d360 
#82
@alexzwanenburg
Add licence and readme to example dataset.
c307e94
@alexzwanenburg
Nest example image and mask into a folder for better experience
598293f
@alexzwanenburg
First complete draft of image filter tutorial.
d2a8782
@alexzwanenburg
Run cells from scratch.
b1addab
@alexzwanenburg
Remove initial cell.
205e941
@alexzwanenburg
Added new tutorial to long-form documentation.
ea9e141 
#73 #72
@alexzwanenburg
Fixed broken links in documentation.
1c969a6
@alexzwanenburg
Added link to configuration settings in tutorials #81
ff673ae
@alexzwanenburg
Added find_branch method to find xml branches with different names.
c589ae9
@alexzwanenburg
Added missing SUV conversion parameters to documentation.
699142d
@alexzwanenburg
Match xml branch names with configuration settings. #81
d30ee7f
@alexzwanenburg
Better handling of PET units that cannot be converted to BQML. #81
b3633d2
@alexzwanenburg
Deprecated code that is no longer used.
10568c1
@alexzwanenburg
Mask modality is now reported in extract_mask_labels. #81
253bda1
@alexzwanenburg
Add missing unit test for extracting mask labels from DICOM SEG objects.
89bf066
@alexzwanenburg
Deprecate the use of n_labels.
bdb16f8
@alexzwanenburg
Define default DICOM attributes to export. #81
1f89d48
@alexzwanenburg
Update tutorials after changes to extract_mask_labels and extract_ima…
f21187f 
…ge_parameters

#81
@alexzwanenburg
Fully document arguments in extract_features, extract_images and simi…
12cf61f 
…lar #81
@alexzwanenburg
Fixed code generating warnings due to numpy matrix subclass.
9ab1912
@alexzwanenburg
Added tests for modality-specific functions #75
2cbc303
@alexzwanenburg
Added initial tests for image file descriptors #75
1d37c06
@alexzwanenburg
Added image descriptor to image and mask import errors and warnings.
6a96910 
#81
This was linked to issues May 14, 2024
JOSS review item: Examples #72
Closed
JOSS review item: Documentation #73
Closed
JOSS review item: CI #75
Closed
JOSS Review: Functionality Comments #81
Closed
JOSS issue #85
Closed
@alexzwanenburg alexzwanenburg self-assigned this May 14, 2024
@alexzwanenburg alexzwanenburg linked an issue May 14, 2024 that may be closed by this pull request
additional minor JOSS issue #80
Closed
@alexzwanenburg alexzwanenburg merged commit ec380b1 into master May 15, 2024
@alexzwanenburg alexzwanenburg deleted the dev2.2.2 branch May 15, 2024 14:51
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JOSS Review: Functionality Comments additional minor JOSS issue JOSS review item: CI JOSS review item: Documentation JOSS review item: Examples
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@alexzwanenburg
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