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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 9 5

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 11 7

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 2 2

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python 1 1

Repositories

Showing 10 of 249 repositories
  • pinery Public

    A LIMS abstraction layer to provide generalized LIMS access via a web service.

    oicr-gsi/pinery’s past year of commit activity
    Java 1 GPL-3.0 0 0 2 Updated Jul 12, 2025
  • cerberus Public

    File provenance library

    oicr-gsi/cerberus’s past year of commit activity
    Java 0 MIT 0 0 1 Updated Jul 12, 2025
  • arriba Public

    Fusion caller which runs off of STAR bam

    oicr-gsi/arriba’s past year of commit activity
    WDL 2 1 0 0 Updated Jul 11, 2025
  • ace Public

    Absolute Copy number Estimation using low-coverage whole genome sequencing data

    oicr-gsi/ace’s past year of commit activity
    WDL 0 0 0 0 Updated Jul 11, 2025
  • delly Public

    Delly workflow produces a set of vcf files with different types of structural variant calls

    oicr-gsi/delly’s past year of commit activity
    WDL 1 2 0 0 Updated Jul 10, 2025
  • varscan Public

    varscan repo contains code for Varscan workflow

    oicr-gsi/varscan’s past year of commit activity
    WDL 0 GPL-3.0 0 0 0 Updated Jul 10, 2025
  • mutect2 Public

    Workflow to run Mutect2 (GATK4)

    oicr-gsi/mutect2’s past year of commit activity
    WDL 2 2 0 1 Updated Jul 10, 2025
  • vardict Public
    oicr-gsi/vardict’s past year of commit activity
    WDL 0 0 0 0 Updated Jul 9, 2025
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 11 GPL-3.0 7 8 3 Updated Jul 8, 2025
  • mavis Public

    MAVIS workflow, annotation of structural variants

    oicr-gsi/mavis’s past year of commit activity
    WDL 0 1 0 0 Updated Jul 8, 2025
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