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Deprecate gitpod, update devcontainer.json for GitHub codespaces

good-first-issue

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#3466 In nf-core/tools;

· kenibrewer opened on Feb 24, 2025

· 

3.5.0

Lint pipelines nextflow schema against the meta schema

enhancement

pipeline-testing

schema

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#3288 In nf-core/tools;

· mirpedrol opened on Nov 20, 2024

Add nf-schema comment to the plugin import and sample sheet channel generation

good-first-issue

schema

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#2980 In nf-core/tools;

· ramirobarrantes opened on May 13, 2024

nf-core pipelines with unpinned nf-validation plugin

templatenf-core pipeline/component templatenf-core pipeline/component template

WIPWork in progressWork in progress

Status: Open.

#2788 In nf-core/tools;

· mashehu opened on Feb 22, 2024

template to include <code>test_data.config</code> in modules repo

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#2639 In nf-core/tools;

· sateeshperi opened on Jan 6, 2024

Maintain modules repository template

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#2577 In nf-core/tools;

· anoronh4 opened on Dec 14, 2023

Automate pushing releases to WorkflowHub

automation

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#2567 In nf-core/tools;

· ewels opened on Dec 9, 2023

Option to delete published data if the pipeline fails

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#2502 In nf-core/tools;

· ewels opened on Nov 7, 2023

iGenomes: Set default base cache path

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#2475 In nf-core/tools;

· ewels opened on Oct 17, 2023

[create] Option to work with other SCM providers (GitLab, BitBucket etc)

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#2343 In nf-core/tools;

· ewels opened on Jun 27, 2023

Add check if parameters are specified via <code>.config</code> file to pipeline template

enhancement

infrastructure

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#2184 In nf-core/tools;

· grst opened on Feb 16, 2023

Template fix-linting: add black + isort

automation

infrastructure

templatenf-core pipeline/component templatenf-core pipeline/component template

Status: Open.

#1815 In nf-core/tools;

· ewels opened on Sep 7, 2022