Search results

RefTrace trail implementation

linting

Status: Open.

#3651 In nf-core/tools;

· mashehu opened on Jul 1, 2025

Pipeline linting: check consistency of .nf-core.yml version

command line toolsAnything to do with the cli interfacesAnything to do with the cli interfaces

enhancement

good-first-issue

linting

Status: Open.

#3620 In nf-core/tools;

· mirpedrol opened on Jun 17, 2025

Pipeline linting test <code>pipeline_if_empty_null</code> can be extremely slow in some contexts

bugSomething isn't workingSomething isn't working

linting

Status: Open.

#3605 In nf-core/tools;

· jfy133 opened on Jun 5, 2025

Sort modules conda environment files

linting

modulesRelated to tools for working with DSL2 modulesRelated to tools for working with DSL2 modules

Status: Open.

Enhancement

#3590 In nf-core/tools;

· edmundmiller opened on May 29, 2025

Autoformatting of R scripts

linting

Status: Open.

#3565 In nf-core/tools;

· grst opened on May 13, 2025

Linting of patched module fails

bugSomething isn't workingSomething isn't working

linting

Status: Open.

#3540 In nf-core/tools;

· mashehu opened on Apr 17, 2025

'modules lint' and 'subworkflow lint' should also ignore files from .gitignore

linting

Status: Open.

#3529 In nf-core/tools;

· Gullumluvl opened on Apr 3, 2025

 ·  

3.5.0

Havin an ssh remote for modules fails linting

bugSomething isn't workingSomething isn't working

linting

Status: Open.

#3510 In nf-core/tools;

· maxulysse opened on Mar 25, 2025

Add a way to tell the linter to ignore specified directories

enhancement

good-first-issue

linting

Status: Open.

#3385 In nf-core/tools;

· zachary-foster opened on Jan 7, 2025

Allow skipping linting of specific subworkflows

enhancement

good-first-issue

linting

Status: Open.

#3278 In nf-core/tools;

· mirpedrol opened on Nov 14, 2024

error_retry label not recognized as standard label for certain module structures

bugSomething isn't workingSomething isn't working

good-first-issue

linting

Status: Open.

#3160 In nf-core/tools;

· Felix-Kummer opened on Sep 6, 2024

modules linting: Check that version.yml has version of all items in <code>environment.yml</code>

linting

modulesRelated to tools for working with DSL2 modulesRelated to tools for working with DSL2 modules

Status: Open.

#3107 In nf-core/tools;

· mashehu opened on Aug 8, 2024