What's Changed

• Update SVDB/merge module to fix language server problems by @fellen31 in #684
• Replace for loop in create_pedigree_file by @fellen31 in #683
• Skip alignment - start from bam files by @kubranarci in #682
• Update deepvariant to 1.8.0 by @ramprasadn in #687
• Address language server issues by @ramprasadn in #688
• Fix spelling and language server warnings by @fellen31 in #689
• Handle spring file inputs by @ramprasadn in #678
• Replace several skip_ parameters with a single skip_tools parameter by @ramprasadn in #690
• Json schema improvements by @ShimiraOleg in #692
• Refactor generate_clinical_set subworkflow by @ramprasadn in #693
• Replace several skip parameters with a skip_subworkflows parameter by @ramprasadn in #694
• Merge master (2.5.0) to dev by @ramprasadn in #704
• Refactor repeat annotation by @fellen31 in #702
• Template update to 3.3.1 by @ramprasadn in #707
• Important! Template update for nf-core/tools v3.3.1 by @nf-core-bot in #705
• Fix issues in dev by @ramprasadn in #709
• Release v2.6.0 by @ramprasadn in #708

New Contributors

• @fellen31 made their first contribution in #684
• @kubranarci made their first contribution in #682
• @ShimiraOleg made their first contribution in #692

Full Changelog: 2.5.0...2.6.0