v3.0.0 - French Chocolatine - [2025-10-04]
Added
- #477, #480, #484 Updated to nf-core template 3.2.1., 3.3.1, 3.3.2 (by @jasmezz, @jfy133)
- #482 Added vertical workflow diagram. (by @jasmezz)
Fixed
- #469 Updated descriptions from 'nextflow_schema.json' and 'schema_input.json'. (by @andreirie)
- #471 Fixed fARGene config parameter
ext.args. (by @jasmezz) - #479 Fixed ABRicate report file not using correct pipeline sample ID as ID. (fix by @jasmezz, @jfy133)
- #486 Updated argNorm citation. (by @Vedanth-Ramji, @jasmezz)
- #498 Fix failing conda CI checks. (by @jasmezz)
Dependencies
| Tool | Previous Version | New Version |
|---|---|---|
| antiSMASH | 7.1.0 | 8.0.1 |
| RGI | 6.0.3 | 6.0.5 |
| amrfinderplus | 3.12.8 | 4.0.23 |
| hAMRonization | 1.1.4 | 1.1.9 |
Deprecated
- #478 Removed
--bgc_antismash_installdiras new antiSMASH module container no longer requires mounting of this directory for execution. (by @mberacochea and @jfy133)
Photo by I, Luc Viatour - Own work, CC BY-SA 3.0
Contributors
mberacochea, jfy133, and 3 other contributors