What's Changed

• deploy documentation to static sites by @shapiromatron in #83
• remove unused script by @shapiromatron in #87
• use pypi.org for installation by @shapiromatron in #88
• fix docs edit url in documentation by @shapiromatron in #85
• fix Quantal Linear plotting w/ background by @shapiromatron in #84
• implement Rao Scott transform by @shapiromatron in #89
• expand range for Nested Dichotomous seed and iterations by @shapiromatron in #90
• switch from makefile to poethepoet for Python commands by @shapiromatron in #91
• nested dichotomous initial and final parameter outputs by @shapiromatron in #86
• Bayesian model averaging - add CDF to word report by @shapiromatron in #92
• add BMD to plotting range by @shapiromatron in #93
• check validity of parameter initialization settings by @shapiromatron in #94
• rao-scott transformation updates by @shapiromatron in #96
• Convert error initial parameter value errors to warnings by @shapiromatron in #97
• Implement Nested Dichotomous - NCTR model by @cwsimmon in #95
• Nctr tuning by @cwsimmon in #98
• Remove reporting of burn-in/samples by @shapiromatron in #99
• fixed calculations for lognormal scaled residual by @cwsimmon in #101
• update documentation for 25.1 by @adavis10 in #100
• fix windows build by @shapiromatron in #102
• Review updates by @shapiromatron in #103
• document jupyter nuances in docs by @shapiromatron in #104
• v25.1 release by @shapiromatron in #105

New Contributors

• @adavis10 made their first contribution in #100

Full Changelog: 24.1...25.1

Released November 25, 2024

• Added Multitumor and Multistage Cancer model
• Add Nested Dichotomous models
• Updated bmdscore library; integration now uses pybind11 for direct integration instead of using a shared library. This should improve performance and stability and make it easier to develop moving forward.
• Build distributions for windows, mac, and linux using cibuildwheel
• Initial release of pybmds; the python components of the package were originally taken from shapiromatron/bmds

Contributors: @cwsimmon @munnsmunns @shapiromatron

Complete Changelog

• change build system to use Cmake by @cwsimmon in #9
• switch python linters to ruff by @shapiromatron in #10
• github action - linux by @shapiromatron in #11
• Dicho python objs by @cwsimmon in #12
• Dicho ma python objs by @cwsimmon in #15
• Cont python objs by @cwsimmon in #16
• Model struct updates by @cwsimmon in #17
• New model stubs by @cwsimmon in #18
• New model stubs by @cwsimmon in #19
• Fix for confidence level bug by @cwsimmon in #20
• Cont cmake fixes by @cwsimmon in #21
• Mscombo by @cwsimmon in #22
• More MSCombo tweaks by @cwsimmon in #23
• Mscombo by @cwsimmon in #24
• github action for windows by @shapiromatron in #13
• add python type stubs to bmdscore by @shapiromatron in #26
• Unit test by @cwsimmon in #27
• Unit test by @cwsimmon in #29
• pybmds by @shapiromatron in #31
• add disclaimer to readme by @shapiromatron in #30
• add lines of code report by @shapiromatron in #32
• fix github action windows build by @shapiromatron in #33
• add C++ test github action by @shapiromatron in #34
• github actions update - windows, linux, and cibuildwheel by @shapiromatron in #38
• update installation guide by @shapiromatron in #39
• Mscombo update by @cwsimmon in #41
• updates from latest BMDS Online deploy by @shapiromatron in #40
• Update docs by @munnsmunns in #42
• multitumor updates by @shapiromatron in #45
• implement priors for nested dichotomous models by @shapiromatron in #44
• update documentation by @shapiromatron in #47
• Trim trailing whitespace command by @shapiromatron in #46
• Nlogistic by @cwsimmon in #49
• add SKIP_BUILD flag by @shapiromatron in #48
• change pybmds version location to root instead of pyproject.toml by @shapiromatron in #50
• pybmds nested logistic by @shapiromatron in #51
• fix nested dichotomous execution and memory allocation by @shapiromatron in #55
• make ruff rules stricter by @shapiromatron in #56
• documentation updates by @shapiromatron in #52
• assorted nested dichotomous and multitumor changes by @shapiromatron in #58
• remove gof_cancer rule from default logic but allow it if it exists by @shapiromatron in #60
• remove R content; revise documentation by @shapiromatron in #59
• add new install python script by @shapiromatron in #57
• use latest versions of identifiers by @shapiromatron in #61
• Nlogistic debug by @cwsimmon in #66
• build python 3.13 wheels by @shapiromatron in #62
• remove mask from continuous individual gof data by @shapiromatron in #63
• revise citation by @shapiromatron in #64
• Documentation revisions by @shapiromatron in #65
• Nlog bmdu by @cwsimmon in #67
• add coverage report artifact and minimum coverage by @shapiromatron in #68
• pybmds - add bmdu to output word, excel, and text for nested dichotomous by @shapiromatron in #70
• Documentation updates from tech review by @shapiromatron in #71
• additional code cleanup by @shapiromatron in #72
• rename src/code_base -> src/bmdscore by @shapiromatron in #73
• python package updates by @shapiromatron in #74
• Multimor optimization by @cwsimmon in #75
• enforce formatting of C++ code by @shapiromatron in #76
• Nlog bugfix by @cwsimmon in #77
• Multi opt debug by @cwsimmon in #78
• Api updates by @shapiromatron in #79
• updated test code with correct priors and new test datasets by @cwsimmon in #80
• UI review; 24.1a6 by @shapiromatron in #81
• Release 24.1 by @shapiromatron in #82

Full Changelog: 23.3.1...24.1

What's Changed

• updated test code with correct priors and new test datasets by @cwsimmon in #80
• UI review; 24.1a6 by @shapiromatron in #81

Full Changelog: 24.1a5...24.1a6

What's Changed

• assorted nested dichotomous and multitumor changes by @shapiromatron in #58
• remove gof_cancer rule from default logic but allow it if it exists by @shapiromatron in #60
• remove R content; revise documentation by @shapiromatron in #59
• add new install python script by @shapiromatron in #57
• use latest versions of identifiers by @shapiromatron in #61
• Nlogistic debug by @cwsimmon in #66
• build python 3.13 wheels by @shapiromatron in #62
• remove mask from continuous individual gof data by @shapiromatron in #63
• revise citation by @shapiromatron in #64
• Documentation revisions by @shapiromatron in #65
• Nlog bmdu by @cwsimmon in #67
• add coverage report artifact and minimum coverage by @shapiromatron in #68
• pybmds - add bmdu to output word, excel, and text for nested dichotomous by @shapiromatron in #70
• Documentation updates from tech review by @shapiromatron in #71
• additional code cleanup by @shapiromatron in #72
• rename src/code_base -> src/bmdscore by @shapiromatron in #73
• python package updates by @shapiromatron in #74
• Multimor optimization by @cwsimmon in #75
• enforce formatting of C++ code by @shapiromatron in #76
• Nlog bugfix by @cwsimmon in #77
• Multi opt debug by @cwsimmon in #78
• Api updates by @shapiromatron in #79

Full Changelog: 24.1a4...24.1a5

Full Changelog: 24.1a0...24.1a0

What's Changed

• change build system to use Cmake by @cwsimmon in #9
• switch python linters to ruff by @shapiromatron in #10
• github action - linux by @shapiromatron in #11
• Dicho python objs by @cwsimmon in #12
• Dicho ma python objs by @cwsimmon in #15
• Cont python objs by @cwsimmon in #16
• Model struct updates by @cwsimmon in #17
• New model stubs by @cwsimmon in #18
• New model stubs by @cwsimmon in #19
• Fix for confidence level bug by @cwsimmon in #20
• Cont cmake fixes by @cwsimmon in #21
• Mscombo by @cwsimmon in #22
• More MSCombo tweaks by @cwsimmon in #23
• Mscombo by @cwsimmon in #24
• github action for windows by @shapiromatron in #13
• add python type stubs to bmdscore by @shapiromatron in #26
• Unit test by @cwsimmon in #27
• Unit test by @cwsimmon in #29
• pybmds by @shapiromatron in #31
• add disclaimer to readme by @shapiromatron in #30
• add lines of code report by @shapiromatron in #32
• fix github action windows build by @shapiromatron in #33
• add C++ test github action by @shapiromatron in #34
• github actions update - windows, linux, and cibuildwheel by @shapiromatron in #38

Full Changelog: 23.3.1...24.1a0

What's Changed

• pybmds nested logistic by @shapiromatron in #51
• fix nested dichotomous execution and memory allocation by @shapiromatron in #55
• make ruff rules stricter by @shapiromatron in #56
• documentation updates by @shapiromatron in #52

Full Changelog: 24.1a3...24.1a4

What's Changed

• Update docs by @munnsmunns in #42
• multitumor updates by @shapiromatron in #45
• implement priors for nested dichotomous models by @shapiromatron in #44
• update documentation by @shapiromatron in #47
• Trim trailing whitespace command by @shapiromatron in #46
• Nlogistic by @cwsimmon in #49
• add SKIP_BUILD flag by @shapiromatron in #48
• change pybmds version location to root instead of pyproject.toml by @shapiromatron in #50

New Contributors

• @munnsmunns made their first contribution in #42

Full Changelog: 24.1a2...24.1a3

What's Changed

• update installation guide by @shapiromatron in #39
• Mscombo update by @cwsimmon in #41
• updates from latest BMDS Online deploy by @shapiromatron in #40

Full Changelog: 24.1a0...24.1a2