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Commits on Oct 31, 2014

• Added evaluation script for counting 2d split and merge errors.

  

  Seymour Knowles-Barley

  committed
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Commits on Aug 6, 2014

• Merge branch 'master' of https://github.com/Rhoana/rhoana

  

  Seymour Knowles-Barley

  committed
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• Added cython fast_create_remap.pyx to speed up global remap creation.

  

  Seymour Knowles-Barley

  committed
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• Clean block changes to handle blocks with no boundary pixels.

  

  Seymour Knowles-Barley

  committed
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Commits on Jul 16, 2014

• Merge branch 'extract-render'

  thouis

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Commits on Jul 15, 2014

• building with scaling

  dmmiron

  committed
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Commits on May 7, 2014

• Added --multicore-keeprunning to driver script.

  

  Seymour Knowles-Barley

  committed
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Commits on May 6, 2014

• Merge branch 'master' of https://github.com/Rhoana/rhoana

  

  Seymour Knowles-Barley

  committed
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Commits on May 5, 2014

• Driver update - added basic multi-core support (jobs packaged together and run concurrently from the shell).

  

  Seymour Knowles-Barley

  committed
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• Important. Changed global_block_id to be based on x,y,z location rather than dictionary order.

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  Seymour Knowles-Barley

  committed
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• Clean block improvements - fill in skipped sections and allow branches (both off by default).

  

  Seymour Knowles-Barley

  committed
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• Segmentation improvement - ignore large blank (all 0) regions for segmentation (previously filled by neighboring regions).

  

  Seymour Knowles-Barley

  committed
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• Bug fixes and minor improvements.

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  Seymour Knowles-Barley

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Commits on Feb 23, 2014

• tested ok.

  

  Seymour Knowles-Barley

  committed
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• qsub fixes

  

  Seymour Knowles-Barley

  committed
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Commits on Feb 22, 2014

• bug fixes

  

  Seymour Knowles-Barley

  committed
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• driver_qsub_probs_only.py fixed

  

  Seymour Knowles-Barley

  committed
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• matchn_slices parameter added to control pairwise volume.

  

  Seymour Knowles-Barley

  committed
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• qsub probs only driver added (for trestles / gordon)

  

  Seymour Knowles-Barley

  committed
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• deep neet (theano) classifier added

  

  Seymour Knowles-Barley

  committed
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Commits on Feb 14, 2014

• seed change to match output_overlay

  

  Seymour Knowles-Barley

  committed
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• pairwise_multimatch added

  

  Seymour Knowles-Barley

  committed
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Commits on Feb 11, 2014

• keep normalized matrices as sparse

  thouis

  committed
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• Merge remote-tracking branch 'origin/lgn' into lgn

  thouis

  committed
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• 2-segment block bug fix.

  

  Seymour Knowles-Barley

  committed
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Commits on Feb 10, 2014

• Add skip-N code

  thouis

  committed
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Commits on Feb 7, 2014

• Merge remote-tracking branch 'origin/lgn' into lgn

  thouis

  committed
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Commits on Feb 6, 2014

• Overlay boundary color update.

  

  Seymour Knowles-Barley

  committed
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• Added extract_overlay_plane. Changed log error messages on repeated failures.

  

  Seymour Knowles-Barley

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Commits on Jan 30, 2014

• Add skip-1 to window fusion

  thouis

  committed
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• Deep net support added, failover / retry added to main .py files, keep-running function added to driver.py (run with -k). Full pipeline now runs without restarts on Odyssey!

  

  Seymour Knowles-Barley

  committed
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Commits on Nov 18, 2013

• Add MIT license

  thouis

  committed
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Commits on Nov 14, 2013

• Changes for LGN segmentation and cleanup (Random Forest version).

  

  Seymour Knowles-Barley

  committed
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• random forest and single-node driver script changes

  

  Seymour Knowles-Barley

  committed
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Commits on Aug 15, 2013

• scripts for extracting and formatting contours for web

  dmmiron

  committed
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