Hey friends ... I'm curious how I might work around this issue below. I've loaded xml as a ws, but when I try to get the gating set to tap into data for a few gates in particular, it's objecting to the "tranformation" type that I gather is encoded in the xml? Thanks for any ideas on how to avoid this? The xml is from flow jo 10. Thank you! The issue occurs regardless or the execute and transform settings.
ws <- CytoML::open_flowjo_xml(paste0(folder_here,"/",xml_file_here))
ws
File location: ../data_II/b27/XML.xml
Groups in Workspace
Name Num.Samples
1 All Samples 5
2 Patient PBMC 5
gs <- CytoML::flowjo_to_gatingset(ws, name = 1)
Error in (function (ws, group_id, subset, execute, path, cytoset, backend_dir, :
*: unknown tranformation type!transforms:linear