User contributions for Mktrost

19 April 2019

• 22:0122:01, 19 April 2019 diff hist +10 BamUtil: recab →Required Generic Parameters current
• 22:0022:00, 19 April 2019 diff hist +31 BamUtil: recab →Handling Recalibration/Implementation Notes

8 April 2019

• 21:3121:31, 8 April 2019 diff hist +10 BamUtil: dedup →Required Parameters current
• 21:3121:31, 8 April 2019 diff hist +6 Template:InBAMInputFile No edit summary current
• 21:3021:30, 8 April 2019 diff hist +1 Template:InBAMInputFile No edit summary
• 21:2921:29, 8 April 2019 diff hist +42 Template:InBAMInputFile No edit summary
• 21:1921:19, 8 April 2019 diff hist +26 Template:InBAMInputFile No edit summary
• 21:1721:17, 8 April 2019 diff hist +120 Template:InBAMInputFile No edit summary
• 21:0321:03, 8 April 2019 diff hist +72 BamUtil: dedup →Overview of the dedup function of bamUtil
• 21:0221:02, 8 April 2019 diff hist +76 BamUtil: dedup →Implementation Notes

30 July 2018

• 20:4620:46, 30 July 2018 diff hist +354 BamUtil No edit summary

12 November 2017

• 23:2023:20, 12 November 2017 diff hist +264 LibStatGen Troubleshooting →Possible Compile Errors current
• 23:1823:18, 12 November 2017 diff hist +273 Template:ToolGitRepo No edit summary current
• 23:0423:04, 12 November 2017 diff hist +913 LibStatGen Download →Official Releases current
• 22:5522:55, 12 November 2017 diff hist +235 BamUtil →Full Release (includes libStatGen)
• 22:4922:49, 12 November 2017 diff hist +762 BamUtil →Release of just BamUtil (does not include libStatGen)
• 22:2822:28, 12 November 2017 diff hist +13 BamUtil: trimBam →Soft Clipping Notes (--clip/-c) current
• 22:2822:28, 12 November 2017 diff hist +26 BamUtil: trimBam →Soft Clipping Notes (--clip/-c)

9 September 2017

• 14:2914:29, 9 September 2017 diff hist 0 VerifyBamID →Command Line Options current

24 August 2017

• 14:5914:59, 24 August 2017 diff hist +11 BamUtil: stats →BaseQC (--pBaseQC and --cBaseQC and --baseSum) current
• 14:5814:58, 24 August 2017 diff hist +29 BamUtil: stats →BaseQC (--pBaseQC and --cBaseQC and --baseSum)
• 14:5714:57, 24 August 2017 diff hist +479 BamUtil: stats →Parameters

14 June 2017

• 03:2003:20, 14 June 2017 diff hist +30 VerifyBamID →Column information in the output files

4 January 2017

• 14:4214:42, 4 January 2017 diff hist +261 Nm User talk:Gzajac Welcome! current
• 14:4214:42, 4 January 2017 diff hist +334 Nm User:Gzajac Creating user page for new user. current

14 April 2016

• 21:3021:30, 14 April 2016 diff hist +36 BamUtil: dedup →Implementation Notes

6 March 2016

• 00:4500:45, 6 March 2016 diff hist +26 BamUtil: gapInfo →Rules current
• 00:1000:10, 6 March 2016 diff hist +1,246 BamUtil: recab →Parameters
• 00:0700:07, 6 March 2016 diff hist −22 BamUtil: recab →Skip Records with any of the Specified Flags (--buildExcludeFlags, --applyExcludeFlags)

5 March 2016

• 23:4523:45, 5 March 2016 diff hist −109 BamUtil: dedup →Skip Records with any of the Specified Flags (--excludeFlags)
• 23:2023:20, 5 March 2016 diff hist +143 BamUtil: dedup →Skip Records with any of the Specified Flags (--excludeFlags)
• 23:1523:15, 5 March 2016 diff hist +43 BamUtil: dedup →Parameters
• 23:0123:01, 5 March 2016 diff hist +95 BamUtil: clipOverlap →ASSUMPTIONS/RESTRICTIONS current
• 23:0023:00, 5 March 2016 diff hist 0 BamUtil: clipOverlap →Parameters
• 22:5922:59, 5 March 2016 diff hist −29 BamUtil: clipOverlap →Skip Records with any of the Specified Flags (--excludeFlags)
• 22:5322:53, 5 March 2016 diff hist +1,936 BamUtil: bam2FastQ →Parameters current
• 22:3622:36, 5 March 2016 diff hist +102 BamUtil: bam2FastQ →Usage
• 22:3522:35, 5 March 2016 diff hist −100 BamUtil: bam2FastQ →Overview of the bam2FastQ function of bamUtil

28 January 2016

• 17:3917:39, 28 January 2016 diff hist +257 GotCloud: Alignment Pipeline →Optional Configurable Settings current

28 October 2015

• 22:0022:00, 28 October 2015 diff hist −136 Releasing GotCloud No edit summary

19 August 2015

• 14:0014:00, 19 August 2015 diff hist +261 Nm User talk:Pjvh Welcome! current
• 14:0014:00, 19 August 2015 diff hist +445 Nm User:Pjvh Creating user page for new user.

30 June 2015

• 13:5613:56, 30 June 2015 diff hist +78 GotCloud: Creating a New Pipeline →Example Pipelines Created
• 13:5113:51, 30 June 2015 diff hist +163 GotCloud: Creating a New Pipeline →Overall Pipeline Definition
• 13:5013:50, 30 June 2015 diff hist 0 GotCloud: Creating a New Pipeline →Defining a New Pipeline
• 13:5013:50, 30 June 2015 diff hist +2,508 GotCloud: Creating a New Pipeline No edit summary
• 13:1213:12, 30 June 2015 diff hist +3,041 GotCloud: Creating a New Pipeline →Configure Each Step
• 12:0812:08, 30 June 2015 diff hist +1,180 GotCloud: Creating a New Pipeline →Defining a New Pipeline

23 June 2015

• 09:5409:54, 23 June 2015 diff hist +921 GotCloud: FAQs →Variant Calling Pipeline FAQs current

26 May 2015

• 11:5211:52, 26 May 2015 diff hist +473 GotCloud No edit summary