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SWAT4LS 2016: Amsterdam, The Netherlands
- Adrian Paschke, Albert Burger, Andrea Splendiani, M. Scott Marshall, Paolo Romano:
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, Amsterdam, The Netherlands, December 5-8, 2016. CEUR Workshop Proceedings 1795, CEUR-WS.org 2017
Long Papers
- Efstratios Kontopoulos, Theodoros Moysiadis, Maria Tsagiopoulou, Sándor Darányi, Peter Wittek, Nikos Papakonstantinou, Stavroula Ntoufa, Georgios Meditskos, Yiannis Kompatsiaris, Kostas Stamatopoulos:
Studying the Cohesion Evolution of Genes Related to Chronic Lymphocytic Leukemia Using Semantic Similarity in Gene Ontology and Self-Organizing Maps. - Cédric Pruski, Júlio Cesar dos Reis, Marcos Da Silveira:
Capturing the Relationship between Evolving Biomedical Concepts via Background Knowledge. - Ali Ayadi, Cecilia Zanni-Merk, François de Bertrand de Beuvron:
Understanding the Behaviour of Complex Biomolecular Networks by Combining Logical and Semantic Modeling. - Maxime Déraspe, Gail Binkley, Daniela Butano, Matthew Chadwick, J. Michael Cherry, Justin Clark-Casey, Sergio Contrino, Jacques Corbeil, Joshua Heimbach, Kalpana Karra, Rachel Lyne, Julie M. Sullivan, Yo Yehudi, Gos Micklem, Michel Dumontier:
Making Linked Data SPARQL with the InterMine Biological Data Warehouse. - Mercedes Argüello Casteleiro, Maria Jesus Fernandez Prieto, George Demetriou, Nava Maroto, Warren J. Read, Diego Maseda-Fernandez, Jose Julio Des Diz, Goran Nenadic, John A. Keane, Robert Stevens:
Ontology Learning with Deep Learning: a Case Study on Patient Safety Using PubMed. - Veruska Zamborlini, Jan Wielemaker, Marcos Da Silveira, Cédric Pruski, Annette ten Teije, Frank van Harmelen:
SWISH for Prototyping Clinical Guideline Interactions Theory. - Dieter De Witte, Laurens De Vocht, Filip Pattyn, Hans Constandt, Erik Mannens, Ruben Verborgh:
Scaling Out Federated Queries for Life Sciences Data in Production. - Marco Roos, Mark D. Wilkinson, Rajaram Kaliyaperumal, Mark Thompson, Claudio Carta, Ronald Cornet, Luiz Olavo Bonino da Silva Santos:
Registries of Domain-Relevant Semantic Reference Models Help Bootstrap Interoperability in Domains with Fragmented Data Resources. - Solène Eholié, Mike Donald Tapi-Nzali, Sandra Bringay, Clément Jonquet:
MuEVo, a Breast Cancer Consumer Health Vocabulary Built Out of Web Forums. - Angel Esteban-Gil, Jesualdo Tomás Fernández-Breis:
Case Report Form based on semantic Web technologies. - Bas Stringer, Albert Meroño-Peñuela, Sanne Abeln, Frank van Harmelen, Jaap Heringa:
SCRY: Extending SPARQL with Custom Data Processing Methods for the Life Sciences. - Erik M. van Mulligen, Wytze Vlietstra, Rein Vos, Jan A. Kors:
Discovering Information from an Integrated Graph Database. - Matheus Silva Mota, Fagner Leal Pantoja, Júlio Cesar dos Reis, André Santanchè:
Progressive Data Integration and Semantic Enrichment Based on LinkedScales and Trails.
Short Papers
- Georgios Meditskos, Efstratios Kontopoulos, Stefanos Vrochidis, Yiannis Kompatsiaris:
Ontology-Driven Context Interpretation and Conflict Resolution in Dialogue-Based Home Care Assistance. - Adam Craig, Seung Ho Bae, Teja Veeramacheneni, Koby Taswell, Carl Taswell:
Web Service APIs for Scribe Registrars, Nexus Diristries, PORTAL Registries and DOORS Directories in the NPD System. - Oya Beyan, Stefan Decker:
An RDF Based Semantic Approach to Model Temporal Relations in Health Records. - Ernesto Jiménez-Ruiz, Valentina Carapella, Elena Lukaschuk, Nay Aung, Kenneth Fung, José Miguel Paiva, Mihir Sanghvi, Stefan Neubauer, Steffen E. Petersen, Ian Horrocks, Stefan K. Piechnik:
Towards the Creation of the Cardiovascular Magnetic Resonance Quality Assessment Ontology (CMR-QA). - Mélanie Courtot, Alex L. Mitchell, Maxim Scheremetjew, Janet Piñero González, Laura I. Furlong, Robert D. Finn, Helen E. Parkinson:
Slim-o-matic: a Semi-Automated Way to Generate Gene Ontology Slims. - Angel Esteban-Gil, Jesualdo Tomás Fernández-Breis:
Easy-to-use Semantic Search of Pharmacological Data.
Posters
- Tommaso Di Noia, Marina Mongiello, Francesco Nocera, Eugenio Di Sciascio:
Ontology-based Reflective Iot Middleware-Enabled Agriculture Decision Support System. - Mascha Jansen, Claudio Carta, Marco Roos, Luiz Olavo Bonino da Silva Santos:
The Organisation of Bring Your Own Data (BYOD) Workshops to Make Life Science Data Linkable at the Source. - Olga Streibel, Göran Kirchner:
Semantics and Interoperability in a Reporting System for Infectious Disease Control. - Ronald Siebes, Victor de Boer, Bryn Williams-Jones, Stian Soiland-Reyes:
Drug Discovery and Big Linked Data. - Leyla J. García, Leonardo Gonzales, Maria Jesus Martin:
A Graph-based Taxonomy RESTful Data Service. - Stella Zevio, Nordine El Hassouni, Manuel Ruiz, Pierre Larmande:
AgroLD Indexing Tools with Ontological Annotations. - Ian Harrow, Martin Romacker, Andrea Splendiani, Stefan Negru, Peter Woollard, Scott Markel, Yasmin Alam-Faruque, Martin Koch, Erfan Younesi, James Malone, Ernesto Jiménez-Ruiz:
Ontologies Guidelines and Evaluation of Ontologies Mapping Tools and Algorithms. - Yasunori Yamamoto, Atsuko Yamaguchi, Andrea Splendiani:
Umaka-Yummy Data: A Place to Facilitate Communication between Data Providers and Consumers. - Harold Solbrig, Eric Prud'hommeaux, Guoqian Jiang:
HL7 FHIR and Schema.org. - Ryan A. Miller, Jonathan Mélius, Nuno Nunes, Egon L. Willighagen, Peter Woollard, Chris T. A. Evelo:
Finding Drugs with Common Downstream Effects, Using Direction Information in Biological Pathways. - Thomas Liener, Tony Burdett, Simon Jupp:
Updates from the EMBL-EBI RDF platform. - Egon L. Willighagen, Micha Rautenberg, Denis Gebele, Linda Rieswijk, Friederike Ehrhart, Jiakang Chang, Georgios Drakakis, Penny Nymark, Pekka Kohonen, Gareth I. Owen, Haralambos Sarimveis, Christoph Helma, Nina Jeliazkova:
Answering Scientific Questions with linked European Nanosafety Data. - Valentin Grouès, Maria Biryukov, Christophe Trefois, Venkata P. Satagopam:
Semantic Web Technologies for a Knowledge Base of Biomedical Facts Extracted from Scientific Literature. - Atsuko Yamaguchi, Yasunori Yamamoto, Kouji Kozaki, Kai Lenz, Hiroshi Masuya, Norio Kobayashi:
SPARQL Query Construction with Monitoring Service for Endpoints. - Filip Pattyn, Steven Vandeschaeve, Stijn Vermaere, Paulo Van Huffel, Kenny Knecht, Hans Constandt:
Semantic Linking and Integration of Researchers and Research Organizations in DISQOVER. - Claus Weiland, Robert Hoehndorf, George Gosline, Quentin Groom, Thomas Hamann, Marco Schmidt:
FLOPO - An Ontology for the Integration of Trait Data from Digitized Floras and Plant Image Collections. - Andra Waagmeester, Egon L. Willighagen, Núria Queralt Rosinach, Elvira Mitraka, Sebastian Burgstaller-Muehlbacher, Tim E. Putman, Julia Turner, Lynn M. Schriml, Paul Pavlidis, Andrew I. Su, Benjamin M. Good:
Linking Wikidata to the Rest of the Semantic Web.
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