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Consider installing snakemake-executor-plugin-slurm when the slurm profile is used to initialize a sunbeam project

enhancement

Status: Open.

#596 In sunbeam-labs/sunbeam;

· Ulthran opened on Nov 17, 2025

Preprocess report overcounting low-complexity reads

bug

Status: Open.

Bug

#592 In sunbeam-labs/sunbeam;

· naomiwilson opened on Nov 6, 2025

Import behavior with editable install

bug

Status: Open.

#583 In sunbeam-labs/sunbeam;

· Ulthran opened on Oct 15, 2025

documentation update

Status: Open.

#580 In sunbeam-labs/sunbeam;

· MasonMandolfo opened on Oct 6, 2025

sbx_release_action

enhancement

github_actionsPull requests that update GitHub Actions codePull requests that update GitHub Actions code

Status: Open.

#520 In sunbeam-labs/sunbeam;

· Ulthran opened on Jun 3, 2025

Custom entry/exit points for extensions

enhancement

Status: Open.

#503 In sunbeam-labs/sunbeam;

· Ulthran opened on May 5, 2025

Check that extensions are up to date

enhancement

Status: Open.

#495 In sunbeam-labs/sunbeam;

· Ulthran opened on Jul 18, 2024

Better automatic resource allocation

enhancement

Status: Open.

#492 In sunbeam-labs/sunbeam;

· Ulthran opened on Jun 25, 2024

Allow for empty input fastqs to run without error

enhancement

Status: Open.

#488 In sunbeam-labs/sunbeam;

· Ulthran opened on Apr 19, 2024

Add <code>--version</code> arg to <code>sunbeam extend</code>

enhancement

Status: Open.

#486 In sunbeam-labs/sunbeam;

· Ulthran opened on Apr 9, 2024

Remove <code>aggregate_reads</code> step in decontam

enhancement

Status: Open.

#484 In sunbeam-labs/sunbeam;

· Ulthran opened on Apr 4, 2024

Remove cutadapt

enhancement

Status: Open.

#483 In sunbeam-labs/sunbeam;

· Ulthran opened on Apr 4, 2024