Stars
Source code for Code Like a Pro in Rust
View the folder directory tree structure, similar to the output of the tree command
Genome modeling and design across all domains of life
A JupyterLab plugin to facilitate invocation of code formatters.
Zenith - sort of like top or htop but with zoom-able charts, CPU, GPU, network, and disk usage
This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shot active learning.
The central location for code in the NewAtlantis fellowship program
🌊 Robust workflows for gathering data about your local ocean.
Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-Crate.
Scripts to benchmark and train foldseek
A Google Apps Script for syncing ICS/ICAL files faster than the current Google Calendar speed
Efficient evolution from protein language models
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
Computational analysis of single-cell alternative splicing: A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Bioinformatics and Systems Bi…
Simulation study of recoding effectiveness
Converting genomic sequence data to tensor-valued orthogonal polynomials and projecting phenotypes onto sequence space.
MyGene.info: A BioThings API for gene annotations
A R Bioconductor package for accessing MyGene.info services
mygene is an easy-to-use Python wrapper to access MyGene.Info services.
Run tools on FASTA files with gnu parallel, and then parse the results.
Repo for running command line-based BLAST in Jupyter environment provided via Binder.
Use Slack to get notified of new papers added to your Zotero group library, and who added them
a script which takes a de novo transcriptome assembly [fasta format], a reference genome [fasta file], and RNAseq reads [fastq format] as input, and outputs a gtf file