A curated list of awesome Machine Learning frameworks, libraries and software.

A Blender addon for visualizing your NEURON model, with customizable voltage traces.

Code for Limbacher, T., Özdenizci, O., & Legenstein, R. (2022). Memory-enriched computation and learning in spiking neural networks through Hebbian plasticity. arXiv preprint arXiv:2205.11276.

Spearmint is a package to perform Bayesian optimization according to the algorithms outlined in the paper: Practical Bayesian Optimization of Machine Learning Algorithms. Jasper Snoek, Hugo Laroche…

Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from linear regression to deep lear…

Playing with Matt's VAE code

Visualisation and analysis of brain imaging data

Real-time behaviour measurement software

Deep Learning Tutorial for Kaggle Ultrasound Nerve Segmentation competition, using Keras

remocolab is a Python module to allow remote access to Google Colaboratory using SSH or TurboVNC.

This package provides Python libNeuroML, for working with neuronal models specified in NeuroML

Spike sorting, analysis, and visualization of ephys data in Python

a Python machine learning library for neurophysiology data

code for Structured Variational Autoencoders

Code for Limbacher, T. and Legenstein, R. (2020). H-Mem: Harnessing synaptic plasticity with Hebbian Memory Networks

Kernel Point Convolution implemented in PyTorch

Brain Modeling Toolkit

Custom-based scripts to update an swc file from a hoc file

Training spiking networks with hybrid ann-snn conversion and spike-based backpropagation

Simulation code for Limbacher, T. and Legenstein, R. (2020). Emergence of Stable Synaptic Clusters on Dendrites Through Synaptic Rewiring

An educational resource to help anyone learn deep reinforcement learning.

pybpod-api

U-Net implementation in PyTorch for FLAIR abnormality segmentation in brain MRI

Code for the "Neural Expectation Maximization" paper.

NeuroPack, a tool for emulating memristor-based neuromorphic architectures

Team keller's Project 3 repo

Learning some numerical linear algebra.