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Release 2.0.0

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@rhpvorderman rhpvorderman released this 09 Oct 06:11
· 1557 commits to develop since this release
v2.0.0
e2559db
  • Memory runtime attributes are now Strings indicating total memory, as opposed to Ints indicating memory per core.
  • Memory inputs for most tasks are now Strings, remaining Int memory inputs are renamed to "memoryGb".
  • Use the biowdl-input-converter container for JsonToYaml, to reduce the amount of containers needed.
  • Add biowdl-input-converter and remove SampleConfigToSampleReadgroupLists which it replaces.
  • GATK.GenotypeGVCFs: Increased memoryMultiplier from 2.0 to 3.0
  • Minimap2: Add -k option to minimap2 mapping
  • Added bwakit task
  • Minimap2: Add the option for --MD tag
  • TALON: Update average memory needs for main TALON process
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