Commits

Branch selector

 develop

User selector

DavyCats

Datepicker

All time

Commit History

Commits on Jul 17, 2025

• Merge pull request #340 from biowdl/snpeff_snpsift

  Show description for 761f8d1
  DavyCats

  authored
  761f8d1

  Copy full SHA for 761f8d1

• Merge branch 'develop' into snpeff_snpsift

  DavyCats

  authored
  89aa627

  Copy full SHA for 89aa627

• address review comments

  DavyCats

  committed
  c676fe2

  Copy full SHA for c676fe2

Commits on Jun 10, 2025

• more memory for bcftools norm

  DavyCats

  committed
  99c562c

  Copy full SHA for 99c562c

• more memory for bcftools norm

  DavyCats

  committed
  5dab6c7

  Copy full SHA for 5dab6c7

• fix bcftools norm

  DavyCats

  committed
  3c8ec63

  Copy full SHA for 3c8ec63

• reset time for bcftools norm

  DavyCats

  committed
  88ac252

  Copy full SHA for 88ac252

• more time for bcftools Norm

  DavyCats

  committed
  c97c55a

  Copy full SHA for c97c55a

• more time for bcftools norm

  DavyCats

  committed
  5d4f5a7

  Copy full SHA for 5d4f5a7

• Add a task for bcftools norm

  DavyCats

  committed
  69a9c0a

  Copy full SHA for 69a9c0a

Commits on Jun 5, 2025

• update changelog, fix missing variable

  DavyCats

  committed
  16656ff

  Copy full SHA for 16656ff

Commits on Jun 3, 2025

• WIP add option to output compressed VCF files to snpeff and snpsift

  DavyCats

  committed
  eafceb0

  Copy full SHA for eafceb0

Commits on Jun 2, 2025

• Merge pull request #334 from biowdl/modkit

  Show description for 70e1bb1
  DavyCats

  authored
  70e1bb1

  Copy full SHA for 70e1bb1

Commits on May 28, 2025

• add ls to snpeff, bcftools view and snpsift so I can see the paths when run on dnanexus

  DavyCats

  committed
  82a5715

  Copy full SHA for 82a5715

Commits on May 27, 2025

• add a useless ls to check if a dnanexus error is caused by lazy loading

  DavyCats

  committed
  2fc90c9

  Copy full SHA for 2fc90c9

• change name of snpsift task

  DavyCats

  committed
  748fe36

  Copy full SHA for 748fe36

• fix wdlTools parsing issue in bcftools annotate

  DavyCats

  committed
  abcddcd

  Copy full SHA for abcddcd

Commits on May 26, 2025

• add an ipnut for an index file in bcftools view

  DavyCats

  committed
  ecd2242

  Copy full SHA for ecd2242

• add region input to bcftools view

  DavyCats

  committed
  d4eb18d

  Copy full SHA for d4eb18d

• Add snpsift filter

  DavyCats

  committed
  d9d989e

  Copy full SHA for d9d989e

• add -no-upstream to snpeff task

  DavyCats

  committed
  1ee07a6

  Copy full SHA for 1ee07a6

Commits on Mar 31, 2025

• Merge pull request #335 from biowdl/pacbio

  Show description for bd031d9
  DavyCats

  authored
  bd031d9

  Copy full SHA for bd031d9

Commits on Sep 7, 2023

• Merge pull request #324 from biowdl/Redmar-van-den-Berg-patch-1

  Show description for 2bf8753
  DavyCats

  authored
  2bf8753

  Copy full SHA for 2bf8753

Commits on Jun 13, 2023

• Merge pull request #322 from biowdl/fastq-filter

  Show description for 25477c5
  DavyCats

  authored
  25477c5

  Copy full SHA for 25477c5

• use 1GiB for fastqFilter

  DavyCats

  authored
  2bc4c06

  Copy full SHA for 2bc4c06

Commits on Jun 12, 2023

• fix copy-paste error

  DavyCats

  authored
  3fc46b9

  Copy full SHA for 3fc46b9

• update changelog

  DavyCats

  authored
  93e491d

  Copy full SHA for 93e491d

• add a task for fastqFilter

  DavyCats

  authored
  cebb1b5

  Copy full SHA for cebb1b5

Commits on Jun 8, 2023

• add missing backslash

  DavyCats

  authored
  502d730

  Copy full SHA for 502d730

• Add revcomp flag to cutadapt

  DavyCats

  authored
  0062b72

  Copy full SHA for 0062b72

Commits on Mar 17, 2023

• Merge pull request #318 from biowdl/shallow_mode

  Show description for c2b179a
  DavyCats

  authored
  c2b179a

  Copy full SHA for c2b179a

Commits on Mar 10, 2023

• update parameter_meta and changelog

  DavyCats

  committed
  36a4575

  Copy full SHA for 36a4575

Commits on Mar 3, 2023

• add purple options needed for shallow mode

  DavyCats

  committed
  5d35105

  Copy full SHA for 5d35105

• add option to enable/disable ploy-g trimming to fastp task

  DavyCats

  committed
  ab54bb5

  Copy full SHA for ab54bb5

Commits on Feb 23, 2023

• Merge pull request #317 from biowdl/fastp_update

  Show description for d2f3c9e
  DavyCats

  authored
  d2f3c9e

  Copy full SHA for d2f3c9e

Pagination

Previous

Next