Zenith

Team Zenith Repository for Spring 2016 I590 Class

Milestone-4 Build instructions :

1. Pull branch Milestone-4 into local system

2. Build the project using Maven build tool, Either use terminal and type "mvn build" or use eclipse and choose "Maven Install"

3. Server Configuration

   • Create Keystore and Self-signed Certificate C:\jdk\bin>keytool -genkey -alias srccodes -keyalg RSA -keystore c:\tomcat7\conf\srccodes.jks

      * -keystore Filepath (say "c:\tomcat7\conf\srccodes.jks") where keystore file will be generated.
     
      * keystore password Password of the keystore to be used by Tomcat. If not provided, then default is "changeit".
     
      * key password Password of the self-signed certificate generated in the keystore. If not provided, then it'll be same as keystore password.
     

   • Tomcat Configuration

      * Open <tomcat-installation-directory>/conf/server.xml in a text editor.
      * Replace the existing connector with the following
      
      ```<Connector port="8443" protocol="HTTP/1.1" SSLEnabled="true"
      maxThreads="150" scheme="https" secure="true"
      clientAuth="false" sslProtocol="TLS"
      keystoreFile="conf/srccodes.jks"
      keystoreType="JKS"
      keystorePass="pass4keystore"
      keyPass="pass4key" /> ```
      * Provide keystoreFile, keystorePass and keyPass values as given in Step #1.
     

   • To run the application on Server's root context, remove existing root folder from "webApps" folder and rename the generated application War file to "ROOT.war"

4. Database Configuration

   • Install mysql community server using the following command: sudo apt-get install mysql-server
   • Please make a note of the password.Default username is root.
   • Test the connection by logging into mysql using the command: mysql -u root -p
   • Open the Workbench and run the DDL.txt text file provided inside the project folder
   • Modify the application.properties present in GatewayApp/src/main/resources by editing the following line with your DB information: spring.datasource.url=jdbc:mysql://localhost:3306/zenith spring.datasource.username=root spring.datasource.password=demo
   • You need to change only the username and password as the database name here is zenith and default port is 3306.

5. Please contact me for the api key file, and place the apiKey.properties file in "%USERHOME%\.stormpath" for windows and "~/.stormpath/" folder in Linux Operating system.

6. Run the tomcat server and navigate browser to "https://localhost:8443/"

7. Create a new account by navigating to the Create Account link. While account creation, please provide the username as the username which is used to login to Karst/BigRed2. This will be the username without the @iu.edu extension.

8. Login to the application with the newly created username and password

9. Once successfully logged in, the interface will display options to Submit, Monitor, Cancel jobs and Download job files

10. Please note that the username that is used for login has to be used as the username for job submission as well.

11. For testing GROMACS, we have provided the GROMACS input files within the gromacs folder inside the project folder.