• Lab page.
• Fiji python tutorial: learn image processing with the open source software Fiji (is Just ImageJ) and the python programming language.
• Prior lab (mirror of old pages) at the Institute of Neuroinformatics, Zurich, Switzerland.
• TrakEM2 software and user manual. See also scripting tutorials in jython for TrakEM2 and the TrakEM2 wiki page with performance tips for the java virtual machine (JVM).
• NIT: Neuron Identification Tool, online support material for the paper "Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts" (J. Neurosci 2010).
• ISBI 2012 image segmentation challenge data (30 serial sections, 512x512 pixels, of neural tissue with cytoplasmic membranes, synapses and mitochondria manually annotated by yours truly.