WO1999029705A9 - Sialyl lewis x and sialyl lewis a glycomimetics - Google Patents
Sialyl lewis x and sialyl lewis a glycomimeticsInfo
- Publication number
- WO1999029705A9 WO1999029705A9 PCT/US1998/025783 US9825783W WO9929705A9 WO 1999029705 A9 WO1999029705 A9 WO 1999029705A9 US 9825783 W US9825783 W US 9825783W WO 9929705 A9 WO9929705 A9 WO 9929705A9
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- rolling
- nmr
- compound
- ring
- compounds
- Prior art date
Links
- NIGUVXFURDGQKZ-UQTBNESHSA-N alpha-Neup5Ac-(2->3)-beta-D-Galp-(1->4)-[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc Chemical compound O[C@H]1[C@H](O)[C@H](O)[C@H](C)O[C@H]1O[C@H]1[C@H](O[C@H]2[C@@H]([C@@H](O[C@]3(O[C@H]([C@H](NC(C)=O)[C@@H](O)C3)[C@H](O)[C@H](O)CO)C(O)=O)[C@@H](O)[C@@H](CO)O2)O)[C@@H](CO)O[C@@H](O)[C@@H]1NC(C)=O NIGUVXFURDGQKZ-UQTBNESHSA-N 0.000 title description 5
- XBSNXOHQOTUENA-KRAHZTDDSA-N alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->3)-[alpha-L-Fuc-(1->4)]-D-GlcNAc Chemical compound O[C@H]1[C@H](O)[C@H](O)[C@H](C)O[C@H]1O[C@H]1[C@H](O[C@H]2[C@@H]([C@@H](O[C@]3(O[C@H]([C@H](NC(C)=O)[C@@H](O)C3)[C@H](O)[C@H](O)CO)C(O)=O)[C@@H](O)[C@@H](CO)O2)O)[C@@H](NC(C)=O)C(O)O[C@@H]1CO XBSNXOHQOTUENA-KRAHZTDDSA-N 0.000 title description 4
- 150000001875 compounds Chemical class 0.000 claims abstract description 171
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- AAEVYOVXGOFMJO-UHFFFAOYSA-N prometryn Chemical compound CSC1=NC(NC(C)C)=NC(NC(C)C)=N1 AAEVYOVXGOFMJO-UHFFFAOYSA-N 0.000 claims abstract description 34
- 230000001404 mediated effect Effects 0.000 claims abstract description 12
- -1 -(CH2)n -CH3 Chemical group 0.000 claims description 120
- 238000000034 method Methods 0.000 claims description 82
- 125000000956 methoxy group Chemical group [H]C([H])([H])O* 0.000 claims description 43
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- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 claims description 7
- 125000004432 carbon atom Chemical group C* 0.000 claims description 6
- GQNZGCARKRHPOH-RQIKCTSVSA-N miocamycin Chemical compound C1[C@](OC(C)=O)(C)[C@@H](OC(=O)CC)[C@H](C)O[C@H]1O[C@H]1[C@H](N(C)C)[C@@H](O)[C@H](O[C@@H]2[C@H]([C@H](OC(=O)CC)CC(=O)O[C@H](C)C/C=C/C=C/[C@H](OC(C)=O)[C@H](C)C[C@@H]2CC=O)OC)O[C@@H]1C GQNZGCARKRHPOH-RQIKCTSVSA-N 0.000 claims description 2
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- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 22
- SHZGCJCMOBCMKK-DHVFOXMCSA-N L-fucopyranose Chemical compound C[C@@H]1OC(O)[C@@H](O)[C@H](O)[C@@H]1O SHZGCJCMOBCMKK-DHVFOXMCSA-N 0.000 description 22
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H13/00—Compounds containing saccharide radicals esterified by carbonic acid or derivatives thereof, or by organic acids, e.g. phosphonic acids
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H13/00—Compounds containing saccharide radicals esterified by carbonic acid or derivatives thereof, or by organic acids, e.g. phosphonic acids
- C07H13/02—Compounds containing saccharide radicals esterified by carbonic acid or derivatives thereof, or by organic acids, e.g. phosphonic acids by carboxylic acids
- C07H13/08—Compounds containing saccharide radicals esterified by carbonic acid or derivatives thereof, or by organic acids, e.g. phosphonic acids by carboxylic acids having the esterifying carboxyl radicals directly attached to carbocyclic rings
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H13/00—Compounds containing saccharide radicals esterified by carbonic acid or derivatives thereof, or by organic acids, e.g. phosphonic acids
- C07H13/02—Compounds containing saccharide radicals esterified by carbonic acid or derivatives thereof, or by organic acids, e.g. phosphonic acids by carboxylic acids
- C07H13/10—Compounds containing saccharide radicals esterified by carbonic acid or derivatives thereof, or by organic acids, e.g. phosphonic acids by carboxylic acids having the esterifying carboxyl radicals directly attached to heterocyclic rings
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H13/00—Compounds containing saccharide radicals esterified by carbonic acid or derivatives thereof, or by organic acids, e.g. phosphonic acids
- C07H13/12—Compounds containing saccharide radicals esterified by carbonic acid or derivatives thereof, or by organic acids, e.g. phosphonic acids by acids having the group -X-C(=X)-X-, or halides thereof, in which each X means nitrogen, oxygen, sulfur, selenium or tellurium, e.g. carbonic acid, carbamic acid
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H15/00—Compounds containing hydrocarbon or substituted hydrocarbon radicals directly attached to hetero atoms of saccharide radicals
- C07H15/26—Acyclic or carbocyclic radicals, substituted by hetero rings
Definitions
- the present invention relates to glycomimetic compounds which can mimic the binding activity of carbohydrates such as sialyl Lewis X (sLe x ) and sialyl Lewis A (sLe a ) . These glycomimetic compounds inhibit or antagonize selectin ligand interactions, and can be used to treat selectin-mediated disorders, such as inflammation.
- P-Selectin (LECAM-3, GMP-140, PADGEM) .
- the physical, molecular, biochemical, and physiological characteristics of this family of receptors are well known in the art.
- the three known members of this family each contain a domain with homology to the calcium-dependent lectins (C- lectins) , an EGF-like domain, and several complement binding protein-like domains (Bevilacqua et al .
- PCT application Publ . No. O97/30984 and references disclosed therein describe the sequence of the known members of the selectin family of receptors and the homology of these receptors to other known proteins, as well as the role of selectins in inflammation, site-specific lymphocyte extravasation, lung injury, and thrombosis. It is also disclosed in those references that E-selectin is transiently expressed on endothelial cells in response to IL-1 and Tumor Necrosis Factor (TNF) , suggesting a role for this receptor in the initial neutrophil-extravasation response to infection and injury. Furthermore, blocking the E-selectin receptor with specific antibodies prevents the influx of neutrophils in a primate model of asthma preventing airway obstruction resulting from the inflammatory response.
- TNF Tumor Necrosis Factor
- the minimal ligand for E-selectin is the sLe x tetra- saccharide consisting of sialic acid, fucose, and N-acetyl lactosamine.
- Lactosamine consists of galactose and 2-amino- 2-deoxyglucose .
- Sialic acid and fucose are bound to the galactose and glucosamine moieties of lactosamine, respectively.
- P and L selectins also bind to sLe x and ligands that share similar structural features .
- glycomimetic structures can inhibit selectin-mediated cell adhesion, and therefore modulate the inflammatory response.
- Various sLe x derived structures, as well as structural glycomimetics can inhibit selectin-mediated cell adhesion, and therefore modulate the inflammatory response.
- the present invention provides a series of compounds in the form of chemically and physiologically stable glycomimics or glycoepitopes that serve to functionally mimic the active features of biologically important oligosaccharides, such as but not limited to sialyl Lewis x
- glycomimetics can be synthesized by coupling two or more components possessing the critical fucose and carboxylate functional groups, or derivatives thereof, using N-alkylations, N-acylations, sulfonylations and related reactions. These structural glycomimetics have been shown to inhibit selectin-ligand interactions and to be useful in the treatment of acute and chronic inflammation diseases, including asthma. These compounds also are useful in the treatment of other selectin-mediated disorders, such as cancer, diabetes, obesity, lung vasculitis, cardiac injury, reperfusion injuries, thrombosis, tissue rejection, arthritis, inflam- matory bowel disease and pulmonary inflammation. These glycomimetics are designed to control or modulate various intercellular actions such as the interactions between cells and the endothelium in cell adhesion and between cells and the interstitial tissues, which interactions initiate or control recognition, differentiation, growth, fertilization, cancer migration, etc.
- the invention relates to the field of medicinal chemistry wherein the inventive compounds contain a glycoside or glycomimetic which is linked, either directly or indirectly, to a desired amine containing organic molecule via a carbon linkage.
- the present invention relates to the field of amine heterocycle chemistry and is directed to tools and methods for the generation of chemical compounds consisting of at least one carbohydrate unit or carbohydrate mimetic unit and an amine heterocycle or amine containing core or scaffold.
- Formulations containing such compounds may be used to treat patients suffering from a variety of selectin-mediated disorders .
- the synthesis of complex carbohydrates is time consuming and costly compared to the synthesis of glycomimetics.
- the synthesis of complex oligosaccharides introduces additional chiral centers, anomeric configurations, and increased molecular size without safeguards to enzymatic cleavage of oxygen-linked glyco- sides.
- the present invention avoids and overcomes the obstacles inherent in complex oligosaccharides by utilizing glycomimetics or more specifically, structural glycomimetics .
- Figure 1 depicts a three-dimensional structure of sLe x and relates this structure to important aspects for the design of the present compounds .
- Figure 2 depicts synthesis strategies for designing the invention compounds.
- Figure 3 depicts a synthetic strategy for a pyridine C- glycoside that mimics s-di-Le x .
- Figure 4 depicts a set of piperdine based carbon glycosides .
- Figure 5 depicts a non-exclusive set of carbohydrate and non-carbohydrate glycomimetics that can be utilized in the G position of structural formula I.
- Figures 6, 7 and 8 depict a set of N-allyl-C-glycosyl piperdine based glycomimetics and derivates thereof prepared according to the present invention.
- Figure 9 depicts a set of sulfated N-allyl-C-glycosyl piperdine compounds according to the present invention.
- Figure 10 depicts a set of non-carbohydrate glycomimetics of the present invention.
- Figure 11 depicts a set of core molecules that can be used as intermediates in the preparation of compounds disclosed herein or in the treatment of selectin-mediated disorders .
- Figure 12 and 13 depict a set of sialic acid derivaties of the present invention.
- One aspect of the present invention is to provide methods for preparing modified amine heterocycles and related structures comprising (1) piperdine and derivatives thereof or open chain amines and (2) a carbohydrate or carbohydrate mimetic moiety, wherein each compound is composed of a modified carbohydrate or other non- carbohydrate-based structural unit.
- Suitable functional groups useful in the preparation of such compounds include, but are not limited to, hydroxyl, carboxyl, thiol, amido, and amino groups.
- the non-carbohydrate units may consist of structures which possess an amine functionality for coupling to the fucose mimic and an ionic group capable of binding to basic residues in the selectins.
- Another aspect of the invention is to provide an array of novel amine heterocycles and related compounds comprising, piperidine and derivatives thereof or open chain amine containing chemical compounds comprising at least one carbohydrate or carbohydrate mimetic unit, including for example a carbon glycoside/heteroatom glycoside, linked to a suitable derivatized functional group or a non-carbohydrate structural unit denoted below.
- the subject invention provides novel chemical compounds comprising a core structure selected from the following formulas :
- X is -CR 3 2 -, -NR 3 -, -CR 8 2 -, -NR 8 -, CH-S-sialic acid, CH- O-sialic acid, -0- or -S-;
- R 10 and R 11 are independently selected from the group consisting of -H, -(CH 2 ) m -CH 3 ,
- R 10 and R 11 may be taken together with the carbon atom to which they are covalently bound to form a five or six member ring, wherein the ring may be saturated or unsaturated and the ring may be substituted with one or more R 1 substituents; wherein R 1 and R 2 , or R 2 and R 3 , or R 3 and R 4 , or R 4 and R 5 , or R 6 and R 7 , or R 7 and R 8 , or R 8 and R 9 independently may be taken together with the carbon atoms to which they are covalently bound to form a five or six member ring, with the proviso that only one ring structure is formed in the compound, wherein the ring may be saturated or unsaturated and the ring may be further substituted with one or more R 1 substitutes;
- M is H, Na + , K + , Me or Et; m is 0-7 ; n is 1, 2 or 3;
- G is Z 1 or Z 2 ;
- Z 1 has the formula:
- R 12 is -H, -CH 3 , -(CH 2 )m -CH 3 , protecting group, -S0 3 M, or O-carbohydrate (linear or branched) ; s is 1, 2, or 3;
- Protecting group i s methyl- , benzyl- , MOM , MEM , MPM, or tBDMS ;
- D is OR 12 , NR 12 2 , or OM; wherein the ring structure of Z 1 is either saturated or unsaturated; andZ 2 has the formula:
- R , 13 J , R , 1 ⁇ 4, R , 1"5, R , 1 i 6 D and R 17 are independently selected from the group consisting of H, -OM, -(CH 2 ) m -C0 2 M, OAc and F, with the proviso that at least two of R 13 , R 14 , R 15 , R 16 and R 17 are not H.
- R 1 or R 2 is -(CH 2 ) m -C0 2 M.
- R 14 may also be -OH or -OMe .
- G is Z 1 . More particularly, at least two of R 14 , R 15 and R 16 are -OH or -OMe.
- a carbon glycoside moiety may be in either the alpha or beta configuration and the linkage by which any sugar is attached to the core structure may be either axial or equatorial.
- the linkage by which any sugar is attached to the core structure may be either axial or equatorial.
- the glyomimetics of the invention can be administered to a subject in need thereof to treat the subject by either prophylactically preventing selectin-mediated disorders or correcting a disorder after the disorder has begun.
- the compounds are preferably administered with a pharmaceutically acceptable carrier, the nature of the carrier differing with the mode of administration, for example, oral administration, usually using a solid carrier and I.V. administration of a liquid salt solution carrier.
- the formulation of choice can be accomplished using a variety of excipients including, for example, pharmaceutical grades of mannitol, lactose, starch, magnesium stearate, sodium saccharin cellulose, magnesium carbonate, and the like.
- Oral compositions may be taken in the form of solutions, suspensions, tablets, pills, capsules, sustained release formulations, or powders.
- the subject compounds can be administered directly in transdermal formulations with permeation enhancers such as DMSO.
- Other topical formula- tions can be administered to treat dermal inflammation.
- a sufficient amount of the desired glycomimetic is administered in an amount that binds to a substantial portion of one or more of the selectins so that inflammation can either be prevented or ameliorated.
- "treating" as used herein shall mean preventing or ameliorating inflammation and/or symptoms associated with inflammation.
- the compositions of the instant invention will contain from less than 1% to about 95% of the active ingredient, preferably about 10% to about 50%.
- Preferably, between about 10 mg and 50 mg will be administered to a child and between about 50 mg and 1000 mg will be administered to an adult.
- the frequency of administration will be determined by the care given based on patient responsiveness.
- Other effective dosages can be readily determined by one of ordinary skill in the art through routine trials establishing dose response curves.
- the compounds or blocking agents of the present invention can be used to treat a wide range of diseases, including diseases such as rheumatoid arthritis and multiple sclerosis.
- the compositions of the invention should be applicable to treat any disease state wherein the immune system turns against the body causing the white cells to accumulate in the tissues to the extent that they cause tissue damage, swelling, inflammation and/or pain.
- the inflammation of rheumatoid arthritis for example, is created when large numbers of white blood cells quickly enter the joints in the area of disease and attack the surrounding tissues.
- Formulations of the present invention might also be administered to prevent the undesirable aftereffects of tissue damage resulting from heart attacks.
- a heart attack occurs and the patient has been revived, such as by the application of anticoagulants or antithrombolytics (e.g., tPA)
- the endothelial lining where a clot formed has often suffered damage.
- antithrombotic has removed the clot
- the damaged tissue beneath the clot and other damaged tissue in the endothelial lining which has been deprived of oxygen become activated.
- the activated endothelial cells then synthesize the ELAM-1 receptors within hours of the cells being damaged.
- glycomimetics of the present invention can be formulated in suppositories and, in some cases, aerosol and intranasal compositions.
- the vehicle composition will include traditional binders and carriers such as, polyalkylene glycols, or triglycerides .
- Such suppositories may be formed from mixtures containing the active ingredient in the range of about 0.5% to about 10% (w/w) , preferably about 1% to about 2%.
- Intranasal formulations will usually include vehicles that neither cause irritation to the nasal mucosa nor significantly disturb ciliary function.
- Diluents such as water, aqueous saline or other known substances can be employed with the subject invention.
- the nasal formulations may also contain preservatives such as, but not limited to, chlorobutanol and benzalkonium chloride.
- a surfactant may be present to enhance absorption of the subject proteins by the nasal mucosa.
- the compounds of the instant invention may also be administered as injectables.
- injectable composi- tions are prepared as liquid solutions or suspensions; solid forms suitable for solution in, or suspension in, liquid vehicles prior to injection may also be prepared.
- the preparation may also be emulsified or the active ingredient encapsulated in liposome vehicles.
- the invention compounds can be mixed with compatible, pharmaceutically acceptable excipients .
- Suitable vehicles are, for example, water, saline, dextrose, glycerol, ethanol, or the like, and combinations thereof.
- the vehicle may contain minor amounts of auxiliary substances such as wetting or emulsifying agents or pH buffering agents.
- auxiliary substances such as wetting or emulsifying agents or pH buffering agents.
- Actual methods of preparing such dosage forms are known, or will be apparent, to those skilled in the art. See, e.g., Remington's Pharmaceutical Sciences, Mack Publishing Company, Easton, Pennsylvania, 17th edition, 1985.
- the composition or formulation to be administered will, in any event, contain a quantity of the invention compounds adequate to achieve the desired state in the subject being treated.
- the various compounds of the present invention can be used by themselves or in combination with pharmaceutically acceptable excipient materials as described above.
- the compounds of the invention can be made as conjugates wherein the compounds of the present invention are linked in some manner to a label.
- the compounds of the present invention can act as biochemical delivery systems for the label so that a site of inflammation can be detected.
- the molecules of the present invention could also be used as laboratory probes to test for the presence of a selectin receptor in a sample.
- Such probes are preferably labeled such as with a radioactive, fluorescent or enzyme activated label .
- linker groups can be attached to the compounds of the invention, and the linker groups can be used to attach various additional compounds such as pharmaceutically acceptable drugs.
- various conjugates are formed which may provide effective drug delivery systems for the drug which is linked to the compound of the invention. It is especially preferred to attach a drug with anti-inflammatory characteristics to the present compounds, so that the linked compound binds to one or more selectins which are associated with inflammation.
- non-steroidal anti-inflammatory drugs such as naproxen or ibuprofen which act as anti-inflammatory agents could be administered bound to the present compounds and could be administered systemically in smaller amounts than usual while obtaining an equivalent effect or even greater anti-inflammatory effect at the site of inflammation.
- the drug could be attached by an enzymatically cleavable linker cleaved by an enzyme such as an esterase.
- Other drugs which might be attached include, but are not limited to, antibiotics, vasodilators and analgesics.
- antibiotics include, but are not limited to, antibiotics, vasodilators and analgesics.
- Such a drug delivery system would reduce any systemic effect normally caused by the drug in that the drugs could be administered in amounts of one-half to one-tenth the normal dose and still obtain the same anti-inflammatory result at the site of inflammation, without adverse side effects.
- Other drug delivery systems may be polymeric backbones which may be, but not limited to, simple polymers, polymeric carbohydrates, cyclodextrins, heparin or its derivatives, peptides, polymeric beads, etc.
- the subject invention provides for the generation and identification of novel molecular species which may act as agonists or antagonists of various biological, chemical or other activities.
- a drawing showing some general structural aspects relating to the present invention is shown in Figure 1.
- the biological activity of complex carbohydrates, such as sialyl Lewis X (sLe x ) and sialyl Lewis A (sLe a ) is important in cell adhesion.
- the key structural features of these oligosaccharides for cell adhesion are believed to be the carboxylic acid functionality of sialic acid and the L- fucose moiety. These functional groups are believed coordinate to a calcium ion in the selectin binding pocket 8-12 angstroms between these two points.
- This structural feature provides a particular charge-distance-coordination relationship that can be used to mimic complex oligosaccharides or can be used as an initial starting point for mapping the lectin binding domains by the construction of libraries of structural glycomimetics.
- these libraries one can use a carboxylic acid, a sulfate, a phosphate or an equivalent moiety to mimic the charged portion of the oligosaccharide and L-fucose, other carbohydrates, or functional carbohydrate mimics, to provide the remaining structural units to either coordinate to calcium in the binding pocket, to functionally mimic the binding properties of L-fucose or to supply additional structural features contributing to the inhibition of cellular adhesion.
- the methods described herein provide reacting glycosides or glycomimetics with amine or amide based structures, such as amine heterocycles / iso-nipecotates, open-chain amine structures, etc., to yield the invention compounds.
- the plurality of different amine based compounds may be synthesized either in liquid phase or, alternately, linked to a solid synthesis support or in a mixture of both. After synthesis, the amine based compounds may be cleaved from the synthesis support (also see W096/36627 or PCT/US96/06522) .
- the compounds generated by the methods of the present invention may comprise an array of molecules with a diverse amine based structure, a diverse carbohydrate moiety or both.
- Suitable functional groups include, but are not limited to, hydroxyl, carboxyl, thiol, amido, and amino groups. In the case a moiety has more than one such suitable functional group, one or more such functional groups may be protected by suitable protecting groups during the coupling reaction.
- Preferred protecting groups include, but are not limited to, benzyl or acetyl groups. After the coupling reaction, the protecting groups may selectively be removed.
- a standard numbering scheme for the amine based structures will be referred to as described in the Merck Index for nipecotic acid (3- piperidinecarboxylic acid) . See Merek 11 6478 ⁇ 1989:
- a large number of amine based structures may be employed as starting materials in the following synthetic strategies to yield sLe x and sLe A glycomimetics. These materials can be prepared under standard organic methodologies.
- pyridine-type structures can be reduced to a desired heterocycle using 10% PdC in ethanol and concentrated hydrochloric acid.
- the functionalization of the amine, amide or other utilizable functional group also can be performed by alkylation, acylation or other suitable functional groups, using for example C1S0 2 G, wherein G represents a general glycoside or glycomimetic as described earlier.
- Preferred amine based starting materials may have an amine, or other reactive group, associated with an amine based heterocycle. More preferred are amine based structures that have an amine, hydroxyl or other reactive groups and in some cases a carboxylic acid or acids situated around a core structure.
- Synthesis of certain of the invention compounds require manipulation about the hydroxyl positions of an amine based structure. Some of these manipulations involve a double inversion methodology about this center.
- the compounds can be inverted from the ⁇ - form to the a- form i.e. the ⁇ -OH to the -OH, using the Mitsunobu method (Mitsunobu, 0. Synthesis (1981), 1).
- invention compounds containing carbohydrates attached to the carbon linking arms for the glycoside conjugates are accomplished by usual glycosidation methods .
- any carbohydrate unit being charged or uncharged and/or desoxygenated species can be formed using the carbon-glycosylation procedure given in this disclosure, but this disclosure does not exclude analogs prepared from branched, linear or other forms of di-, tri- and poly saccharides or oligosaccharides or combinations .
- a derivatized carbon-glycoside can be further utilized as a linking group between a pyran ring and the spacer attached to the amine based structures, by a selective protection methodology involving use of a 2 ' 3 ' -benzylidene derivative in which selective rearrangement and/or functionalization and/or glycosidation can be accomplished prior to deprotection .
- the various derivatives are converted to potentially more useful compounds.
- a vast array of methods for carbon-carbon bond formation at the anomeric carbon of a glycoside are known in the art, which also can be applied to the formation of other heteroatom glycosides, such as carbon-phosphorous, carbon- sulfur, carbon-nitrogen, or carbon-silicon bonds at the anomeric position.
- the typical procedure to make carbon - carbon bonds at the anomeric carbon involves nucleophilic attack on the electrophilic center.
- electrophilic sugars have been employed, such as reducing sugars (or lactols), alkyl glycosides, anomeric esters, anomeric trichloroacetimidates, and glycosyl halides .
- the carbon nucleophiles that have been used include silyl enol ethers, olefins, allyl-, propargylsilanes, cyanides, homo- enolates, and organometallics such as Grignard reagents, organolithiums, cuprates, and aluminates . These reactions can be used to modify the anomeric position.
- Protecting groups used when modifying the anomeric position of carbohydrates will be apparent to the skilled artisan.
- a plurality of functional groups may be employed.
- the C-atom of the carbohydrate used for the formation of the carbon glycosidic bond can be modified by differential protection of functional groups, as will be apparent to those skilled in the art. Techniques and methods for the protection of functional groups can be found, among other places, in Greene and Wutz, supra .
- the affinity of the compounds of the invention for a receptor can be enhanced by providing multiple copies of the invention compounds in close proximity, preferably using a scaffolding provided by a carrier moiety. It has been shown that provision of such a multiple valence with optimal spacing between the moieties dramatically improves binding to a receptor. (See, for example, Lee, Y. C. et al . , Biochem 23:4255 (1984)).
- the multivalency and spacing can be controlled by selection of a suitable carrier moiety.
- suitable carrier moiety include but are not limited to molecular supports which contain a multiplicity of functional groups that can be reacted with functional groups associated with the compounds of the invention.
- a particularly preferred approach involves coupling of the compounds of the invention to amino groups of the carrier through reductive amination.
- Reductive amination is a particularly convenient way to couple aldehyde moieties to free amino groups by first forming a Schiff base and then treating the conjugate with a reducing agent, such as a hydride reducing agent.
- the amino group-bearing carrier is mixed with the carbohydrate moiety at about pH 9 and allowed to form the
- Particularly convenient carrier moieties to obtain multivalent forms of the invention compounds include aromatic linkers, aliphatic chains, amines (e.g. N (CH2CH2NH2) 3) , proteins and peptides, particularly those containing lysyl residues which have ⁇ -amino groups available for binding. These linking units serve to present symmetrical and unsymmetrical monomer units at a specified distance to change the binding affinity of the construct. It is also useful to include in the peptide or protein at least one tyrosine residue, as this offers a convenient site for labeling, for example with radioactive iodine.
- a particularly convenient carrier to obtain a trivalent couple is the peptide Lys-Tyr-Lys. Complete reaction of the compounds of the invention with the free amino groups on this peptide result in a trivalent moiety.
- compounds of the invention of the general formula (2_) may be used to make multivalent constructs:
- Formula 2 Of course, a variety of carriers can be used, including proteins such as BSA or HSA, a multiplicity of peptides including, for example, pentapeptides, decapeptides, pentadecapeptides, and the like.
- the peptides or proteins contain the desired number of amino acid residues having free amino groups in their side chains; however, other functional groups, such as sulfhydryl groups or hydroxyl groups can also be used to obtain stable link- ages.
- the steroid or carbohydrate compounds of the invention may be oxidized to contain carboxyl groups or utilize the carboxyl groups which can then be derivatized with either free amino groups to form amides or with hydroxyl groups to form esters.
- a suitably functionalized biotin tether may be attached with subsequent complexation with avidin for multivalent forms .
- the structure of the inventive compounds may be in different isomeric forms and such are encompassed by this disclosure.
- the carbon glycoside moiety may be in either the alpha or beta configuration and the linkage by which any sugar is attached may be either axial or equatorial.
- acetates and benzoates may serve as protecting groups for the hydroxyl groups in sugars and display neighboring group participation in glycosidation reactions.
- Figure 3 shows a non-exclusive set of carbohydrate and non-carbohydrate glycomimetics that are useful to provide the chelating site shown in Figure 1.
- the structures in Figure 3 can be utilized as the G Group in structural formula I . These compounds can be obtained from conventional sources.
- THF Tetrahydrofuran
- DMF dimethylforamide
- Trimethylsilane trifluoromethane sulfonic acid (10.24 g, 46.03 mmol, 1.00 mmole equiv.) was added dropwise in anhydrous acetonitrile (30 mL, overall reaction concentration 0.2M) and the reaction contents were stirred at 0°C for 30 minutes. After 30 minutes, the reaction was diluted with ethyl acetate (230 mL) and the reaction was terminated by pouring the contents slowly into aqueous saturated sodium bicarbonate. The heterogeneous layers were separated and the organic phase was washed twice with portions of water, 1.0M hydrochloric acid and brine.
- Trimethylsilane trifluoromethane sulfonic acid (10.24 g, 46.03 mmol, 1.00 mmole equiv.) was added dropwise in anhydrous acetonitrile (30 mL, overall reaction concentration 0.2M) and the reaction contents were stirred at 0°C for 30 minutes. After 30 minutes, the reaction was diluted with ethyl acetate (230 mL) and the reaction was terminated by pouring the contents slowly into aqueous saturated sodium bicarbonate. The heterogeneous layers were separated and the organic phase was washed twice with portions of water, 1.0M hydrochloric acid and brine.
- a second product, obtained as a result of these conditions, was the ⁇ -L-2, 3, 4-tri-0-benzyl-fucopyranose- -L-2, 3, 4-tri-O-benzyl- fucopyranose. mp 47-49°C.
- the reaction was monitored by tic (product Rf slightly higher than starting material) .
- the tic conditions used were 10% ethyl acetate in hexanes (v/v) .
- the reaction contents were poured into cold water and extracted with EtOAc .
- the organic layer was washed twice with saturated cold sodium thiosulfate, saturated NaHC03, and with water.
- the product was dried over anhydrous sodium sulfate and filtered to remove the drying agent. The solvent was removed in vacuo which afforded a light yellow waxy solid.
- the reagent ratios for the remaining per-O-acetylated carbohydrates were for example: 1, 2, 3, 4, 6-penta-O-Acetyl-D-galactopyranoside (1.00 mmole equiv.) and 2-chloromethyl-3-trimethylsilyl-l-propene (2.00 mmole equiv.) were dissolved in acetonitrile (1.3M) .
- Boron trifluoride etherate (2.00 mmole equiv.) and trimethyl- silyltriflouromethane sulfonate (0.40 mmole equiv.) were carefully added neat at room temperature. The reaction was refluxed for 6 hours and worked up as described. TLC 30% ethyl acetate in hexanes.
- Structural glycomimetics based on isonipecotic, carboxypiperidine, and other heterocyclic acids, including sulfated analogs also were designed to mimic the functional biological activity of complex carbohydrates important in cell adhesion such as sialyl Lewis x (sLe x ) and sialyl Lewis a
- Selectin inhibitors can be complex oligosaccharides, glycomimetics, sulfated glycomimetics, sulfatide, sulfated polymers such as fucoidan, heparin, heparin sulfate proteoglycans that bind to L-selectin and calcium-dependent heparin-like L-selectin ligands, dextran sulfate, sulfated glycolipids, polysulfated derivatives of b-cyclodextrin and smaller sulfated (sulfate clustering) species like sulfated .myo-inositols show binding activity towards L-selectin.
- inhibitors not all contain sialic acid or fucose like the natural epitopes, but all contain charged and coordinating groups, and/or a charge cluster or distribution, that are separated by various distances.
- design and utilization of different structural motifs for selectin inhibition depend on the intended mode of use (i.v., i.h., p.o.) and desired pharmacological (ADME) profiles. Therefore, inorganic sulfates have been added to a selected set of compounds in order to address this concept.
- Figure 4 depicts an example of a set of compounds having increasing charge/distance relationship which are intended to map the charge/distance spatial relationships of sLe x and sLe a .
- a novel pyridine carbon- glycoside was synthesized from the cyclization of C-glycosyl ketone aldehyde amine compound 3.
- the ⁇ -C-L-fucopyranosyl- allylchloride 1 reacted with allylamine and then protected by di- tert-butyl-dicarbonate to give the diallylamine compound 2 in overall 99% yield.
- Compound 2 was ozonized and reduced by dimethylsulfide to provide the ketone aldehyde compound 3 in 54% yield.
- the presence of the ketone and aldehyde groups were confirmed by ⁇ 3 C-NMR spectrum.
- allylic carbon- glycoside can also be used to prepare novel pyridine-based- carbon-glycosides .
- Glucose, galactose, mannose and sialic acid can be substituted for the fucose.
- the crude product was purified on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, and 10% methanol in water.
- the product fraction was evaporated and dried completely. Under strong basic condition, some of the polymers were cleaved from the octadecyl silica gel.
- the dried mixture was redissolved in water (2 mL) and purified on a reversed phase octadecyl silica gel clot in a glass buchner funnel again eluting with water, 10% methanol in water.
- the Wang's resin from Sigma has been coupled with N- Fmoc protected isonipecotic acid with a loading level of 0.54 mmole/g.
- the coupled resin (100 mg, 0.054 mmole) was put in a 12 mL polypropylene cartridge with PE frit and the cartridge was stoppered with a rubber septa.
- To the cartridge was added 20% piperidine in DMF (5 mL) .
- the mixture was kept at room temperature for 1 minute and then the solution was released.
- To the cartridge was added another portion of 20% piperidine in DMF (5 mL) .
- the mixture was kept for 20 minutes at room temperature.
- the solution was released and the resin was washed with DMF (5 mL x 10) and CH2CI2 (5 mL x 10) .
- the resin was dried under vacuum for 0.5 h.
- GM 4491 1 ti NMR (CDCI3): ⁇ 7.35 - 7.11 (m, 5H, Ph) , 4.13 (m, 2H, H-2e and H-6e) , 3.51 (s, 3H, COOCH3), 2.86 (m, 2H, CH2Ph) , 2.66 (m, 2H, H-2a and H-6a) , 2.53 (m, IH, H-a), 1.77 (m, 2H, H-3e and H-5e) , 1.56 (m, IH, H-4)), 1.45 (s, 9H, C(CH3)3), 1.26 (m, 2H, H-3a and H-5a) .
- GM 4442 1 H NMR (CDCI3): ⁇ 4.09 (m, 2H, H-2e and H- 6e) , 3.64 (s,3H, COOCH3 ) , 2.54 (m, 2H, H-2a and H-6a) , 2.06 (m, 2H, H-3e and 5e) , 1.57 (m, 6H) , 1.40 (s, 9H, OC(CH3)3), 1.17 (m, 7H) .
- GM 4146 After purification on a silica gel column eluting with CHCl3 ⁇ MeOH (95:5 and 9:1), a white solid compound was obtained.
- GM 4147 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water, and lyophilization, a white amorphous solid was obtained.
- GM 4223 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water and lyophilization, a white amorphous solid was obtained.
- GM 4224 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water and lyophilization, a white amorphous solid was obtained.
- GM 4420 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water and lyophilization, a white amorphous solid was obtained.
- NCH2C CH2, H-2e and H-6e) , 2.90 (m, 2H, H-2a and H-6a) , 2.64
- GM 4308 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water and lyophilization, a white amorphous solid was obtained.
- GM 4494 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water and 20% methanol in water, and lyophilization, a white amorphous solid was obtained.
- GM 4495 After purification on a silica gel column eluting with CHCl3-MeOH (95:5 and 9:1), a white solid compound was obtained.
- GM 4496 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water and 20% methanol in water, and lyophilization, a white amorphous solid was obtained.
- GM 4508 After purification on a silica gel column eluting with CHCl3-MeOH (9:1 and 5:1), a white solid product was obtained.
- GM 3379 After purification on a silica gel column eluting with CHCl3-MeOH (95:5 and 9:1), a white solid compound was obtained.
- DMSO DMSO
- GM 3403 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water, and lyophilization, a white amorphous solid was obtained.
- GM 3456 After purification on a silica gel column eluting with CHCl3-MeOH (9:1 and 5:1), a white solid compound was obtained.
- GM 3457 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water and lyophilization, a white amorphous solid was obtained.
- GM 4443 After purification on a silica gel column eluting with CHCl3-MeOH (9:1 and 5:1), a white solid compound was obtained.
- GM 3404 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water and lyophilization, a white amorphous solid was obtained.
- GM 3427 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water and lyophilization, a white amorphous solid was obtained.
- H-3' or H-4' 4.84 (m, 2H, H-2' or H-3' or H-4'), 4.48 (m,
- GM 3405 After purification on a silica gel column eluting with CHCl3-MeOH (95:5 and 9:1), a white solid compound was obtained which was a 1:1 mixture of two diastereoisomers.
- GM 3424 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water and lyophilization, a white amorphous solid was obtained which was a mixture of two diastereoisomers.
- GM 3426 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water and lyophilization, a white amorphous solid was obtained which was a mixture of two diastereoisomers.
- GM 3443 After purification on a silica gel column eluting with CHCl3-MeOH (95:5 and 9:1), a white solid compound was obtained which was a 1:1 mixture of two diastereoisomers.
- GM 3445 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water and lyophilization, a white amorphous solid was obtained.
- GM 3589 ⁇ NMR (CDCI3): ⁇ 5.50 (s, IH, H-a), 3.54 (s,3H, COOCH3), 2.83 - 2.77 (m, 6H in piperidine ring), 2.11 (m, 2H in piperidine ring).
- GM 3590 After purification on a silica gel column eluting with CHCl3-MeOH (95:5 and 9:1), a white solid compound was obtained.
- GM 3591 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water, and lyophilization, a white amorphous solid was obtained.
- GM 3508 After purification on a silica gel column eluting with CHCl3-MeOH (95:5 and 9:1), a white solid compound was obtained.
- the ZV-allyl-C- ⁇ -L-fucosyl 4-hydroxypiperidine compound (3, 2.36 g, 5.52 mmole, 1 mmole equiv.) was dissolved in dry pyridine (11 mL) .
- sulfur trioxide pyridine complex (1.76 g, 11.04 mmole, 2 mmole equiv.) and the mixture was stirred at room temperature overnight (16 hrs) under nitrogen balloon protection.
- the TLC showed the complete disappearance of starting material.
- To the mixture was added methanol (25 mL) to destroy any excess sulfur trioxide pyridine complex. The solution was stirred at room temperature for 15 minutes and then all of the solvent was evaporated.
- the mixture was under high vacuum dry for 3 hrs and then redissolved in water (2 mL) .
- the water mixture was loaded on a reversed phase octadecyl silica gel clot in a glass buchner funnel and eluted with water, 10% methanol in water and 20% methanol in water to obtain the sulfated intermediate 4. After evaporation of methanol and lyophilization, a white amorphous solid 4 was obtained.
- the sulfated intermediate 4 was dissolved in dry methanol (50 mL) . To the solution was added 1.5 equivalent of NaOMe in methanol (0.5 M) and the mixture was stirred at room temperature for 10 minutes. TLC showed complete deacetylation.
- GM 3459 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water and lyophilization, a white amorphous solid was obtained.
- GM 3991 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water and lyophilization, a white amorphous solid was obtained.
- GM 3993 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water and lyophilization, a white amorphous solid was obtained.
- GM 4143 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water and lyophilization, a white amorphous solid was obtained.
- GM 4149 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water and lyophilization, a white amorphous solid was obtained.
- GM 3960 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water and lyophilization, a white amorphous solid was obtained.
- ⁇ H NMR (D2O) ⁇ 5.42
- GM 4200 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water and lyophilization, a white amorphous solid was obtained.
- GM 4201 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water and lyophilization, a white amorphous solid was obtained.
- GM 4202 After purification on a reversed phase octadecyl silica gel clot in a glass buchner funnel eluting with water, 10% methanol in water and lyophilization, a white amorphous solid was obtained.
- Scheme 5 The general procedure for the synthesis shown in Scheme 5 involves the acylation of a piperidine derivative or analogue (1), in which the acidic function is protected by a protecting group (R 1 ) , with a carbohydrate derived acid (2), in which the hydroxyl groups are optionally protected by appropriate protecting groups (R 2 ) . If the carbohydrate contains an amino group the amino group also should be protected (R 3 ) .
- the protecting groups of the carbohydrate can be removed from the coupling product (3) retaining the ester protecting group R 1 to give compound 4, subsequent removal of the acid protecting group gives compound 5. Alternatively, simultaneous removal of all three protecting groups in compound 3 can yield compound 5 directly. Examples of each of these procedures are provided in greater detail below.
- Procedure 1 General procedure for the acylation of piperidine derivatives with carbohydrate-derived acids in solution
- GM4610, GM4611 and GM4631 4-Carboxymethylene-piperidine methyl ester was coupled with 3- (2 , 3 , 4-tri-O-actyl- -L- fucopyranosyl) -propionic acid using procedure 1, followed by chromatography (toluene- acetone, 3:1) to give the coupling product in 54% yield; MS: [M+H] + 486.3, [M+Na] + 508.5; [ ⁇ ] D -45° (c 1.5, chloroform).
- GM4611 was converted into its sodium salt GM4631 using Procedure 5.
- 13 C-NMR (D 2 0) ⁇ 15.93 (Me) , 20.22 and 20.26 (CH 2 ) , 29.44 and 29.50 (CH 2 ) , 31.37 and 31.41 (CH 2 ) , 32.07 (CH 2 ) , 33.13 (CH) , 42.29 (CH 2 ), 42.67 and 42.71 (CH 2 ) , 46.67 (CH 2 ) , 67.33 (CH) , 68.04 (CH) , 69.98 (CH) , 71.93 (CH) , 75.54 and 75.59 (CH) 173.82 (CONH), 179.64 (COOH) .
- GM4727 was converted into its sodium salt GM4746 using Procedure 5.
- GM4728 was converted into its sodium salt GM4747 using Procedure 5.
- GM4485 (0.3 g) was stirred in a mixture of 1,4-dioxane and trifluoroacetic acid (1:1, 10 mL) at room temperature for 6 hours. The mixture was concentrated, the residue was purified on C ⁇ 8 silicagel by gradient elution with water- methanol mixtures. Eluted first was GM4488 as the trifluoroacetic acid salt (O.lg, 32%), followed by unreacted GM4485. [ ⁇ ] D -27.8° (c 1.7, water).
- GM4486 and GM4487 4-Carboxymethylene-piperidine methyl ester was coupled with methyl 3, 4-di-0-benzoyl-2-deoxy-2- [ ( 9-fluorenylmethoxy- carbonyl) amino] - ⁇ -D-glucopyranosiduronic acid using procedure 1, followed by chromatography (toluene-acetone, 5:1) to give the coupling product 3 in 78% yield, [ ⁇ ] D +8.5° (c 1.8, chloroform). MS: Calcd for C 44 H 44 N 2 0 ⁇ 776.8, Found [M+H] + 777.2.
- Wang Resin was used as the solid support in these reactions (Advanced ChemTech, 1% cross linked, 200-400 mesh size, 0.97mmol/g loading level) .
- the coupling of Wang resin and trans-4-NHFmoc-methylcyclohexane carboxylic acid was done in a round bottom flask. All of the parallel reactions and washings were done in a polypropylene cartridge (12ml) with a frit at the bottom and a two-way valve beneath the frit. Solvents may be forced through with a syringe plunger at the top, and reaction mixtures may be gently stirred by putting a small magnetic stirring bar inside the cartridge.
- trans- 4-NHFmoc-methylcyclohexane carboxylic (0.25g, loading level: 0.53mmol/g) was added to 20% piperidine in DMF (6ml). The slurry stayed at room temperature for one minute, and the solvent was released through the open valve at the bottom. Another portion of 20% piperidine in DMF (6ml) was added again to the resin and it stayed at room temperature for 20 minutes before the solvent was released. The resin then was washed with DMF (5x), and CH 2 C1 2 (5x). The cartridge was placed in a decicator and was dried via vacuum for two hours. Then it was used for the coupling reaction.
- Amounts used for the coupling reactions were as follows: each acid, 3 fold excess; HOAT: 4.5 fold excess; DIC: 6 fold excess.
- the coupling reactions were performed according to the following general procedures .
- To a solution of the acid and HOAT in DMF (6ml) was added DIC (as calculated above) .
- the mixture was stirred at room temperature for 0.5-1 hour and was then transfered through a syringe to the cartridge containing the Fmoc cleaved support.
- a small stirring bar was placed inside the cartridge and the slurry was stirred gently at room temperature for 48 hours.
- a mixture solvent of TFA:CH 2 C1 2 1:1 (v/v) (6ml) was added to the cartridge containing the resin.
- the resin turned purple a few seconds after the TFA:CH 2 C1 2 mixture was added.
- the slurry was left standing at room temperature for 30 minutes. Then the solution was released and was collected in a glass tube.
- the resin was washed with CHC1 2 (2mlx2) and the washing solution was also collected in the same tube.
- the cleavage was repeated for the second time. TLC showed that the cleavage was almost complete in the first cleavage. There was only a small trace of compound was found in the second time cleavage.
- the solution from first and second time cleavage and washings were combined and concentrated. The residue was ready for the deprotection.
- GM 4562: 64.1mg, 1 H-NMR (DMSO-d6-D 2 0 6:1, 60 oC) ⁇ 0.86 (m, 2H, CH 2 cyclohexyl) , 1.14 (d, 3H, CH 3 Fuc) , 1.23 (dddd, 2H, CH 2 cyclohexyl) , 1.32 (m, IH, CHcyclohexyl), 1.68 (bdd, 2H, CH 2 cyclohexyl) , 1.85 (bdd, 2H, CH 2 cyclohexyl) , 2.08 (m, IH, CHcyclohexyl), 2.88 (d, 2H) , 2.94 (t, IH, CHcyclohexyl), 3.67 (m, IH, partially covered by HOD), 3.82 (dd, IH) , 3.96 ( , IH) , 4.16 (d, IH, Jl,2 4.2 Hz H-l).
- GM 4563 150.8mg, X H-NMR (DMSO-d6, 60 °C) ⁇ 0.87 (m, 2H, CH 2 cyclohexyl) , 1.22 (dddd, 2H, CH 2 cyclohexyl) , 1.32 (m, IH, CHcyclohexyl), 1.65 (bd, 2H, CH 2 cyclohexyl) , 1.84 (bdd,
- GM 4406 76 mg, ⁇ -NMR (D0) ⁇ 1.22 (2d, 6H, 2x CH 3 Fuc) , 1.60 (m, 4H, 2x CH 2 isonip) , 1.88 (m, 4H, 2x CHisonip) , 2.24 (m, covered by aceton CHisonip) , 2.71 (m, 2H, 2x CHisonip) , 2.85 (m, 2H, 2x CH 2 isonip) , 3.24 (m, 2H, 2x CH 2 isonip) , 3.92 (m, 4H) , 4.25 (m, 2H) , 4.92 (2H, partially covered by HOD H-l).
- CH 2 isonip) 2.20 (m, 4H, 2x CH 2 isonip) , 2.70 (m, 2H, 2x CHisonip) , 2.94 (m, 2H, 2x CH 2 isonip) , 3.30 (m, 2H, 2x CH 2 isonip) , 3.42 (2s, 6H, 2x OCH 3 ) , 3.82 (2dd, 2H) , 3.94 (m, 4H) , 4.11 (m, 2H, 2x CH 2 isonip) , 4.34 (m, 2H, 2x CH 2 isonip) , 4.58 (dd, 2H) , 4.79 (2d, 2H, partially covered by HOD, H-l) .
- GM 4408 87 mg, X H-NMR (D 2 0) ⁇ 1.15, 1.18 (2d, 2x 3H, 2x CH 3 Fuc) , 1.60 (m, 4H, 2x CH 2 isonip) , 2.00 (m, 4H, 2x CH 2 isonip) , 2.70 (m, 2H, 2x CHisonip) , 2.84 (m, 6H, 3x CH 2 isonip) , 3.27 (m, 2H, 2x CH 2 isonip) , 3.77 (m, 4H) , 3.98 (m, 6H include CH 2 ) , 4.32 (m, 2H, 2x Hsceleton) , 4.43 (m, 2H, 2x Hsceleton) .
- GM 4436 83 mg, X H-NMR (D 2 0) ⁇ 1.12, 1.14 (2d, 6H, 2x CH 3 Fuc) , 1.20 ( , 4H, CH 2 Carb . isonip) , 1.79 (m, 4H, 2x CH 2 Carb. isonip) , 2.02 (m, 2H, 2x CHCarb . isonip) , 2.74 (m, 4H, 2x CH 2 Carb. isonip) , 2.86 (m, 2H) , 3.16 (m, 2H) , 3.74 (m, 4H) , 3.95 (m, 6H) , 4.38 (m, 4H) .
- N-Acyl-L-thiazolidine-4-carboxylic acid derivatives are shown in Table 0:
- GM4784 85 mg, MS: 322.2(M+H)+, 344.2 (M+Na) + .
- GM4785 80 mg, MS: 336.3(M+H)+, 358.2 (M+Na) + .
- GM4789 73 mg, MS: 352.1(M+H)+, 374.1 (M+Na) + .
- GM4790 52 mg, MS: 254.3(M+H)+.
- N-Acyl tetrahydroisoquinoline carboxylic acid derivatives are shown in Table M:
- GM4791 27 mg, MS: Calcd for C ⁇ 7 H 21 N0 7 : 351.1. Found 350.3 [M-H1-, 374.3 [M+Na]+.
- GM4792 82 mg, MS: 366.4(M+H)+, 388.4 (M+Na)+.
- GM4793 67 mg, MS: 380.1(M+H)+, 402.1 (M+Na) +.
- GM4795 93 mg, MS: 396.2(M+H)+, 418.4 (M+Na)+.
- GM4796 94 mg MS: 382.4(M+H)+, 404.3 (M+Na) +.
- GM4797 117 mg, MS Calcd for C ⁇ 9 H 25 N0 8 : 395.2. Found 394.3 [M-H]-, 418.3 [M+Na]+, 396.3 [M+H]+.
- N-Acyl ⁇ -alanine derivatives are shown in Table I : 3.1 Dipeptides:
- GM4743 61 mg, X H-NMR (DMSO-d6) ⁇ 1.15 (d, 3H, CH 3 Fuc) , 2.23 (dd, IH, CH 2 ) , 2.38 (t, 2H, CH 2 ) , 2.48 (dd, IH, CH 2 ) , 3.25 (m, 2H, CH 2 Fuc) , 3.42 (dd, IH) , 3.51 (dd, IH) , 3.64 (dd, IH) , 3.75 (m, IH) , 4.14 ( , IH, H-l) , 7.96 (PhOH) .
- GM4744 64 mg, ⁇ - MR (DMSO-d6) ⁇ 2.23 (dd, IH, CH 2 ) ,
- GM 4872 71 mg, MS: Calcd for d 3 H 22 N 2 0 9 : 350.1. Found 349.4 [M-H]-, 373.3 [M+Na]+.
- GM4873 62 mg, MS: Calcd for C ⁇ 4 H 24 N 2 0 9 : 364.1. Found
- GM 4509 and GM 4513 2,3,4, 6-tetra-O-acetyl- ⁇ -D-galactopyranosyl-l- (4- ethoxycarbonyl-piperidinecarbo-dithioate) .
- Ethyl isonipecotate (0.15 mL, 1.0 mmol) was added to a stirred suspension of sodium hydride (1.0 mmol) in N,N- dimethylformamide (10.0 mL) at 0 °C . After ten minutes, carbon disulfide (1.2 mmol) was added dropwise, and the mixture was stirred for an additional thirty minutes.
- GM 4895 To a solution of ethyl isonipecotate (0.21 mL, 1.37 mmol) in N, N-dimethylformamide (10 mL) , sodium hydride (1.37 mmol) was added and the mixture was stirred for ten minutes. After cooling to 0 °C, carbon disulfide (0.1 mL, 1.65 mmol) was added dropwise, and the mixture was stirred for thirty minutes. A solution of l-bromo-2- (2, 3, 4, -tri-O-acetyl- ⁇ -L-fucopyranosyl) -ethane
- GM 4754 and GM 4755 Ethyl isonipecotate (0.21 mL, 1.37 mmol) in N, N-dimethylformamide (10 mL) was reacted with carbon disulfide (0.1 mL, 1.65 mmol) in the presence of sodium hvdride (1.37 mmol). Then l-bromo-2- (2, 3, 4 , 6-tetra- O-acetyl- ⁇ -D-galactopyranosyl) -ethane (0.54 g, 1.37 mmol) was added and the mixture to prepare the protected ethyl- piperidinecarbo-dithioate derivative.
- GM 4752 and GM 4769 Ethyl isonipecotate (0.21 mL, 1.37 mmol) was reacted with carbon disulfide (0.1 mL, 1.65 mmol) in the presence of sodium hydride (2.75 mmol) followed by l-bromo-2- (2,3,4, 6-tetra-O-acetyl- ⁇ -D-mannopyranosyl) - ethane (0.54 g, 1.37 mmol) . The reaction was worked up as described previously and the residue was deprotected in ethanol (20 mL) with sodium ethoxide.
- GM 4598 and GM 4633 To a solution of ethyl isonipecotate (0.15 mL, 1.0 mmol) in pyridine (5.0 mL) at 0°C, a solution of 2, 3, 4 , 6-tetra-O-acetyl- ⁇ -D-galacto- pyranosyl isothiocyanate (0.39 g, 1.0 mmol) in pyridine
- Structural glycomimetics shown in Figure 10 also were designed to mimic the functional biological activity of complex carbohydrates important in cell adhesion such as sialyl Lewis (sLe x ) and sialyl Lewis a (sLe a ) .
- DMAP 4-Dimethylaminopyridine
- the coupled resin (200 mg, 0.108 mmole) was put in a 12 mL polypropylene cartridge with PE fit and the cartridge was stoppered with a rubber septa. To the cartridge was added 20% piperidine in DMF (5 mL) . The mixture was kept at room temperature for 1 minute and then the solution was released. To the cartridge was added another portion of 20% piperidine in DMF (5 mL) . The mixture was kept for 20 minutes at room temperature. The solution was released and the resin was washed with DMF (5 mL x 10) and CH2CI2 (5 mL x 10) . The resin was dried under vacuum for 2 hours.
- GM 4416 50% yield.
- Structural glycomimetics like GM4456, GM4341, GM4447, GM4484, GM4366, GM4626, GM4516, GM4782, GM4740, GM4818, GM4781, GM4897, shown in Figures 12 and 13 and Table U were designed according to the teachings herein to mimic the functional biological activity of complex carbohydrates important in cell adhesion such as sialyl Lewis x (sLe x ) and sialyl Lewis 9 (sLe a ) .
- the sialic acid core compounds GM4877, GM4878, GM4896 and GM4849 shown in Figure 13 may be used as intermediates in the preparation of these compounds which may be prepared according to the teaching disclosed herein.
- Neutrophils roll along vessel walls, attach to the vessel, and then migrate into tissues at sites of acute inflammation. Selectins mediate the rolling and attachment of neutrophils. Thus, inhibition of neutrophil attachment to selectins indicates activity as a cell adhesion inhibitor and as an anti-inflammatory.
- Adhesion of leukocytes or HL- 60 cells to P- and E-selectin under flow conditions in the presence of the compound to be assayed is measured according to the methods described by Patel, et al . J. Clin. Invest. (1995) 96:1887-1896.
- Adhesion of leukocytes or HL-60 cells to P- and E- selectin under flow conditions was assayed as follows. Fluid shear stresses present in the microvasculature are simulated in a parallel-plate flow chamber. Jones, et al . , Biophys. J. (1994) 65:1560-1569; Moor, et al . , J. Cell. Biol. (1995) 128:661-671. Leukocytes (10 6 /ml) in HBSS/0.5% HSA are perfused through the chamber at the desired wall shear stress. Leukocytes rolling is allowed to equilibrate for 4 min.
- CHO Chinese Hamster Ovary
- IL-l ⁇ , TNF ⁇ or IL-4 stimulated human endothelial cells and for 8 min. on selectin-coated plastic before data acquisition.
- Experiments comparing control and test leukocytes are performed in parallel chambers on the same culture dish. Leukocyte interactions are visualized with a x40 objective (field of view of 0.032 mm 2 ) using phase-contrast video microscopy. Interactions are quanti- fied using a computer imaging system (Sun Microsystem, Mountain View, CA; Inovision, Durham, NC) .
- the number of adherent or rolling leukocytes is measured by digitizing image frames and determining the number of cells that are firmly adherent or rolling as described by Jones, et al . supra. Detachment of leukocytes is determined by allowing leukocytes to adhere to the surface under static conditions then initiating flow at a wall shear stress of 1 dyn/cm 2 . The wall shear stress is increased incrementally every 30s and the number of leukocytes remaining adherent is determined. All experiments are performed at 22°C unless indicated otherwise. In certain experiments cells are pre- incubated for 10 min with inhibitor and rolling is assayed in the continuous presence of the inhibitor. Results of these experiments are presented in the Tables below.
- a complete cDNA for the E, L and/or P-selectin receptor was obtained by PCR starting with total RNA isolated from IL-1 stimulated human umbilical vein endothelium. The resulting cDNA was inserted into the CDM8 plasmid (see Aruffo et al . , Proc. Natl. Acad. Sci. USA (1987) 84:8573) and the plasmid amplified in E . coli . Plasmid DNA from individual colonies was isolated and used to transfect COS cells. Positive plasmids were selected by their ability to generate COS cells that support HL-60 cell adhesion.
- These labeled cells can be used as probes in two assay systems to screen for recognition of the compounds of formula I . More specifically, compounds of formula I may be adsorbed to the bottoms of PVC microliter wells or resolved on TLC plates. In either assay the compounds may be probed for their ability to support adhesion of E, L and/or P-selectin-transfected COS cells, untransfected COS cells, or COS cells transfected with a plasmid containing an irrelevant cDNA, under conditions of controlled detachment force (see Swank-Hill et al . , Anal. Biochem. (1987) 183:27; and Blackburn et al . , J. Biol. Chem. (1986) 261:2873 each of which is incorporated herein by reference to disclose the details of such assaying methodology) . The results of this assay are shown in the Tables below.
- Chinese Hamster Ovary (CHO) cells were transfected by electroporation with plasmids CDM8-E-selectin or CDM8-P- selectin (containing the cDNA for the full-length E- or P- selectin, respectively) and pSVneo, and selected by resistance to neomycin. Individual cells were cloned and/or selected by flow cytometry for selectin expression using monoclonal antibodies to E- or P-selectin.
- HL-60 cells were counted and 7.5xl0 6 cells/plate were removed.
- the cells were washed by filling a 50 ml centrifuge tube with PBS (no more than 20 ml of cells/50 ml tube) .
- the cells were resuspended at 2xl0 6 /ml (7.5 ml for 2 plates) .
- BCECF-AM [10 mM stock] at 5 ⁇ M, 1/2000 dilution was added.
- the cell preparation was incubated for 30 minutes at 37°C.
- the tube was filled with PBS to wash, then it was centrifuged as before, and decanted.
- the cells were pelleted at 1000 rpm for 10 min.
- the cells were resuspended at 1.5xl0 6 cells/ml (10 ml) .
- Japan were sensitized with 0.5 ml of 5% ovalbumin subcutaneously and 0.5 ml intraperitoneally; booster injections were performed 7 days apart. Eight or 9 days after the final injection, the animals were placed in a clear chamber (41 x 41x 50 cm) which was connected to the output of a supersonic wave nebulizer (NE-U11B, OMRON) . All animals inhaled 10 mcg/ml salbutamol, a ⁇ -adrenoceptor agonist, for 5 min. before antigen exposure. The duration of the antigen (ovalbumin: 10 mg/ml) exposure was 6 min. Then, the guinea pigs were anesthetized with pentobarbital (30 mg/kg, ip) 24 hours after antigen challenge. The trachea was cannulated by a disposable intravenous catheter,
- the results of this test are shown in the Tables below. >5000 4200, >5000
- GM 4409 >10000/4517 >10000/>10000
- c r- m GM 4410 >10000/>10000 3607/6524 ro ⁇ > GM 4 11 6461/7407 5926/5304
- IC ⁇ side ( ⁇ M) IC 0 ( ⁇ M) lC 90 ( ⁇ M) IC, U ( ⁇ M) ⁇ C 91) ( ⁇ M) IC 90 ( ⁇ M)
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Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| AU18042/99A AU1804299A (en) | 1997-12-08 | 1998-12-04 | Sialyl lewis x and sialyl lewis a glycomimetics |
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| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US6797197P | 1997-12-08 | 1997-12-08 | |
| US60/067,971 | 1997-12-08 |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| WO1999029705A2 WO1999029705A2 (en) | 1999-06-17 |
| WO1999029705A3 WO1999029705A3 (en) | 1999-08-19 |
| WO1999029705A9 true WO1999029705A9 (en) | 1999-11-11 |
Family
ID=22079613
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/US1998/025783 WO1999029705A2 (en) | 1997-12-08 | 1998-12-04 | Sialyl lewis x and sialyl lewis a glycomimetics |
Country Status (2)
| Country | Link |
|---|---|
| AU (1) | AU1804299A (en) |
| WO (1) | WO1999029705A2 (en) |
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| US6991798B1 (en) | 1998-08-07 | 2006-01-31 | Emisphere Technologies, Inc. | Compounds and compositions for delivering active agents |
| US7129274B1 (en) | 1999-11-05 | 2006-10-31 | Emisphere Technologies Inc. | Phenoxy carboxylic acid compounds and compositions for delivering active agents |
| US7279597B1 (en) | 1999-11-05 | 2007-10-09 | Emisphere Technologies, Inc. | Phenyl amine carboxylic acid compounds and compositions for delivering active agents |
| US7417022B2 (en) | 1996-03-29 | 2008-08-26 | Mhr Institutional Partners Iia Lp | Compounds and compositions for delivering active agents |
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| US6610329B2 (en) | 1993-04-22 | 2003-08-26 | Emisphere Technologies Inc. | Compositions for the delivery of antigens |
| DE69925276T2 (en) | 1998-07-27 | 2005-10-06 | Emisphere Technologies, Inc. | SUBSTANCES AND COMPOSITIONS FOR THE ADMINISTRATION OF ACTIVE SUBSTANCES |
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| US10766970B2 (en) * | 2016-07-01 | 2020-09-08 | Wake Forest University Health Sciences | Modified carbohydrates, compositions comprising the same, and methods of making and using the same |
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| US5789385A (en) * | 1993-06-16 | 1998-08-04 | Glycomed Incorporated | Sialyl Lewisx mimetics containing phenyl backbones |
| DE19532902A1 (en) * | 1995-09-06 | 1997-03-13 | Hoechst Ag | Novel glycomimetics as selectin antagonists and anti-inflammatory drugs made from them |
| DE19537334A1 (en) * | 1995-10-09 | 1997-04-10 | Hoechst Ag | New piperidine carboxylic acid and pyrrolidine carboxylic acid derivs. |
-
1998
- 1998-12-04 AU AU18042/99A patent/AU1804299A/en not_active Abandoned
- 1998-12-04 WO PCT/US1998/025783 patent/WO1999029705A2/en active Application Filing
Cited By (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US7417022B2 (en) | 1996-03-29 | 2008-08-26 | Mhr Institutional Partners Iia Lp | Compounds and compositions for delivering active agents |
| US6991798B1 (en) | 1998-08-07 | 2006-01-31 | Emisphere Technologies, Inc. | Compounds and compositions for delivering active agents |
| US7129274B1 (en) | 1999-11-05 | 2006-10-31 | Emisphere Technologies Inc. | Phenoxy carboxylic acid compounds and compositions for delivering active agents |
| US7279597B1 (en) | 1999-11-05 | 2007-10-09 | Emisphere Technologies, Inc. | Phenyl amine carboxylic acid compounds and compositions for delivering active agents |
Also Published As
| Publication number | Publication date |
|---|---|
| WO1999029705A3 (en) | 1999-08-19 |
| WO1999029705A2 (en) | 1999-06-17 |
| AU1804299A (en) | 1999-06-28 |
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