US20080027053A1 - Antimicrobial oxazolidinone prodrugs - Google Patents
Antimicrobial oxazolidinone prodrugs Download PDFInfo
- Publication number
- US20080027053A1 US20080027053A1 US11/774,746 US77474607A US2008027053A1 US 20080027053 A1 US20080027053 A1 US 20080027053A1 US 77474607 A US77474607 A US 77474607A US 2008027053 A1 US2008027053 A1 US 2008027053A1
- Authority
- US
- United States
- Prior art keywords
- methyl
- oxazolidin
- pyrrolo
- pyrazol
- ylmethyl
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
- 239000000651 prodrug Substances 0.000 title abstract description 32
- 229940002612 prodrug Drugs 0.000 title abstract description 32
- IZXIZTKNFFYFOF-UHFFFAOYSA-N 2-Oxazolidone Chemical compound O=C1NCCO1 IZXIZTKNFFYFOF-UHFFFAOYSA-N 0.000 title abstract description 17
- 230000000845 anti-microbial effect Effects 0.000 title abstract description 5
- 150000001875 compounds Chemical class 0.000 claims abstract description 82
- 239000004480 active ingredient Substances 0.000 claims abstract description 4
- 125000000217 alkyl group Chemical group 0.000 claims description 19
- -1 Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid ethoxy-hydroxy-phosphoryloxymethyl ester Chemical class 0.000 claims description 15
- 238000006243 chemical reaction Methods 0.000 claims description 14
- 150000003839 salts Chemical class 0.000 claims description 13
- 229910052739 hydrogen Inorganic materials 0.000 claims description 11
- 239000001257 hydrogen Substances 0.000 claims description 11
- 125000004435 hydrogen atom Chemical group [H]* 0.000 claims description 11
- 125000002496 methyl group Chemical group [H]C([H])([H])* 0.000 claims description 11
- AGXVWIJWSYBGQB-KRWDZBQOSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 2-(methylamino)acetate Chemical compound O=C1O[C@@H](CN(C(=O)OCOC(=O)CNC)C(C)=O)CN1C(C=C1F)=CC=C1N1CC2=NN(C)C=C2C1 AGXVWIJWSYBGQB-KRWDZBQOSA-N 0.000 claims description 9
- ITEOJMZEZSYNGF-FQEVSTJZSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 2-morpholin-4-ylacetate Chemical compound C([C@@H]1OC(=O)N(C1)C=1C=C(F)C(N2CC3=NN(C)C=C3C2)=CC=1)N(C(=O)C)C(=O)OCOC(=O)CN1CCOCC1 ITEOJMZEZSYNGF-FQEVSTJZSA-N 0.000 claims description 9
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 claims description 8
- XJWVFUOVNSLIHR-ICSRJNTNSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl (2s)-pyrrolidine-2-carboxylate Chemical compound C([C@@H]1OC(=O)N(C1)C=1C=C(F)C(N2CC3=NN(C)C=C3C2)=CC=1)N(C(=O)C)C(=O)OCOC(=O)[C@@H]1CCCN1 XJWVFUOVNSLIHR-ICSRJNTNSA-N 0.000 claims description 7
- WXKLKFKDRZHMLI-QFIPXVFZSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 4-(phosphonooxymethyl)benzoate Chemical compound C([C@@H]1OC(=O)N(C1)C=1C=C(F)C(N2CC3=NN(C)C=C3C2)=CC=1)N(C(=O)C)C(=O)OCOC(=O)C1=CC=C(COP(O)(O)=O)C=C1 WXKLKFKDRZHMLI-QFIPXVFZSA-N 0.000 claims description 7
- 125000004193 piperazinyl group Chemical group 0.000 claims description 7
- VTLCXJYJUXSYLB-PKHIMPSTSA-N 1-[ethoxy(hydroxy)phosphoryl]oxyethyl n-acetyl-n-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamate Chemical compound O=C1O[C@@H](CN(C(=O)OC(C)OP(O)(=O)OCC)C(C)=O)CN1C(C=C1F)=CC=C1N1CC2=NN(C)C=C2C1 VTLCXJYJUXSYLB-PKHIMPSTSA-N 0.000 claims description 6
- GRVRHZZNFXGPHL-VYIIXAMBSA-N 1-phosphonooxyethyl n-acetyl-n-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamate Chemical compound O=C1O[C@@H](CN(C(=O)OC(C)OP(O)(O)=O)C(C)=O)CN1C(C=C1F)=CC=C1N1CC2=NN(C)C=C2C1 GRVRHZZNFXGPHL-VYIIXAMBSA-N 0.000 claims description 6
- 229910018828 PO3H2 Inorganic materials 0.000 claims description 6
- WAZFPRRVOPOGFG-HSTJUUNISA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 1-methylpyrrolidine-2-carboxylate Chemical compound CN1CCCC1C(=O)OCOC(=O)N(C(C)=O)C[C@@H]1OC(=O)N(C=2C=C(F)C(N3CC4=NN(C)C=C4C3)=CC=2)C1 WAZFPRRVOPOGFG-HSTJUUNISA-N 0.000 claims description 6
- XEMCFKYMJUFHTB-NRFANRHFSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 2-(4-methylpiperazin-1-yl)acetate Chemical compound C1CN(C)CCN1CC(=O)OCOC(=O)N(C(C)=O)C[C@@H]1OC(=O)N(C=2C=C(F)C(N3CC4=NN(C)C=C4C3)=CC=2)C1 XEMCFKYMJUFHTB-NRFANRHFSA-N 0.000 claims description 6
- LXCZRWHYKXMLDR-SFHVURJKSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 2-(dimethylamino)acetate Chemical compound O=C1O[C@@H](CN(C(=O)OCOC(=O)CN(C)C)C(C)=O)CN1C(C=C1F)=CC=C1N1CC2=NN(C)C=C2C1 LXCZRWHYKXMLDR-SFHVURJKSA-N 0.000 claims description 6
- 125000005907 alkyl ester group Chemical group 0.000 claims description 6
- 125000000623 heterocyclic group Chemical group 0.000 claims description 6
- 239000008194 pharmaceutical composition Substances 0.000 claims description 6
- QWFLRVWBYPHQJV-HNNXBMFYSA-N phosphonooxymethyl n-acetyl-n-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamate Chemical compound O=C1O[C@@H](CN(C(=O)C)C(=O)OCOP(O)(O)=O)CN1C(C=C1F)=CC=C1N1CC2=NN(C)C=C2C1 QWFLRVWBYPHQJV-HNNXBMFYSA-N 0.000 claims description 6
- JBTYLWUMOMXEND-ZYZRXSCRSA-N 1-[acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxyethyl 2-piperazin-1-ylacetate Chemical compound C([C@@H]1OC(=O)N(C1)C=1C=C(F)C(N2CC3=NN(C)C=C3C2)=CC=1)N(C(C)=O)C(=O)OC(C)OC(=O)CN1CCNCC1 JBTYLWUMOMXEND-ZYZRXSCRSA-N 0.000 claims description 5
- AKQNEJKJDYSHBP-OFVILXPXSA-N 2-o-[[acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl] 1-o-tert-butyl (2s)-pyrrolidine-1,2-dicarboxylate Chemical compound C([C@@H]1OC(=O)N(C1)C=1C=C(F)C(N2CC3=NN(C)C=C3C2)=CC=1)N(C(=O)C)C(=O)OCOC(=O)[C@@H]1CCCN1C(=O)OC(C)(C)C AKQNEJKJDYSHBP-OFVILXPXSA-N 0.000 claims description 5
- BRDAULNVYTVBQN-QFIPXVFZSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 2-[bis[(2-methylpropan-2-yl)oxy]phosphoryloxy]acetate Chemical compound O=C1O[C@@H](CN(C(=O)C)C(=O)OCOC(=O)COP(=O)(OC(C)(C)C)OC(C)(C)C)CN1C(C=C1F)=CC=C1N1CC2=NN(C)C=C2C1 BRDAULNVYTVBQN-QFIPXVFZSA-N 0.000 claims description 5
- MXPXZNHLNSJCAX-FQEVSTJZSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 2-[methyl-[(2-methylpropan-2-yl)oxycarbonyl]amino]acetate Chemical compound O=C1O[C@@H](CN(C(=O)OCOC(=O)CN(C)C(=O)OC(C)(C)C)C(C)=O)CN1C(C=C1F)=CC=C1N1CC2=NN(C)C=C2C1 MXPXZNHLNSJCAX-FQEVSTJZSA-N 0.000 claims description 5
- QCKYGXOWNNYLSA-INIZCTEOSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 2-phosphonooxyacetate Chemical compound O=C1O[C@@H](CN(C(=O)C)C(=O)OCOC(=O)COP(O)(O)=O)CN1C(C=C1F)=CC=C1N1CC2=NN(C)C=C2C1 QCKYGXOWNNYLSA-INIZCTEOSA-N 0.000 claims description 5
- HIJBGBUWAJZTKN-FQEVSTJZSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 2-piperazin-1-ylacetate Chemical compound C([C@@H]1OC(=O)N(C1)C=1C=C(F)C(N2CC3=NN(C)C=C3C2)=CC=1)N(C(=O)C)C(=O)OCOC(=O)CN1CCNCC1 HIJBGBUWAJZTKN-FQEVSTJZSA-N 0.000 claims description 5
- LFRHIJPHCFEUBE-BHVANESWSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 4-[bis(phenylmethoxy)phosphoryloxymethyl]benzoate Chemical compound C([C@@H]1OC(=O)N(C1)C=1C=C(F)C(N2CC3=NN(C)C=C3C2)=CC=1)N(C(=O)C)C(=O)OCOC(=O)C(C=C1)=CC=C1COP(=O)(OCC=1C=CC=CC=1)OCC1=CC=CC=C1 LFRHIJPHCFEUBE-BHVANESWSA-N 0.000 claims description 5
- IAKDFNHYMBUJPM-DHUJRADRSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 4-bis(phenylmethoxy)phosphoryloxybenzoate Chemical compound C([C@@H]1OC(=O)N(C1)C=1C=C(F)C(N2CC3=NN(C)C=C3C2)=CC=1)N(C(=O)C)C(=O)OCOC(=O)C(C=C1)=CC=C1OP(=O)(OCC=1C=CC=CC=1)OCC1=CC=CC=C1 IAKDFNHYMBUJPM-DHUJRADRSA-N 0.000 claims description 5
- MZFOAMNEXVDTPZ-NRFANRHFSA-N [acetyl-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamoyl]oxymethyl 4-phosphonooxybenzoate Chemical compound C([C@@H]1OC(=O)N(C1)C=1C=C(F)C(N2CC3=NN(C)C=C3C2)=CC=1)N(C(=O)C)C(=O)OCOC(=O)C1=CC=C(OP(O)(O)=O)C=C1 MZFOAMNEXVDTPZ-NRFANRHFSA-N 0.000 claims description 5
- 125000000719 pyrrolidinyl group Chemical group 0.000 claims description 5
- ZQASIVRDILJTJX-BPARTEKVSA-N 1-[bis[(2-methylpropan-2-yl)oxy]phosphoryloxy]ethyl n-acetyl-n-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamate Chemical compound O=C1O[C@@H](CN(C(=O)OC(C)OP(=O)(OC(C)(C)C)OC(C)(C)C)C(C)=O)CN1C(C=C1F)=CC=C1N1CC2=NN(C)C=C2C1 ZQASIVRDILJTJX-BPARTEKVSA-N 0.000 claims description 4
- IJLQFEABSVGFJM-WEYKJFAMSA-N 1-[ethoxy(phenylmethoxy)phosphoryl]oxyethyl n-acetyl-n-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamate Chemical compound C([C@@H]1OC(=O)N(C1)C=1C=C(F)C(N2CC3=NN(C)C=C3C2)=CC=1)N(C(C)=O)C(=O)OC(C)OP(=O)(OCC)OCC1=CC=CC=C1 IJLQFEABSVGFJM-WEYKJFAMSA-N 0.000 claims description 4
- GEHQQBZREMRZJY-NRFANRHFSA-N bis[(2-methylpropan-2-yl)oxy]phosphoryloxymethyl n-acetyl-n-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamate Chemical compound O=C1O[C@@H](CN(C(=O)C)C(=O)OCOP(=O)(OC(C)(C)C)OC(C)(C)C)CN1C(C=C1F)=CC=C1N1CC2=NN(C)C=C2C1 GEHQQBZREMRZJY-NRFANRHFSA-N 0.000 claims description 4
- 239000000546 pharmaceutical excipient Substances 0.000 claims description 4
- KYNOEAKZSDNCET-CSYSAMQLSA-N [ethoxy(phenylmethoxy)phosphoryl]oxymethyl n-acetyl-n-[[(5r)-3-[3-fluoro-4-(2-methyl-4,6-dihydropyrrolo[3,4-c]pyrazol-5-yl)phenyl]-2-oxo-1,3-oxazolidin-5-yl]methyl]carbamate Chemical compound C([C@@H]1OC(=O)N(C1)C=1C=C(F)C(N2CC3=NN(C)C=C3C2)=CC=1)N(C(C)=O)C(=O)OCOP(=O)(OCC)OCC1=CC=CC=C1 KYNOEAKZSDNCET-CSYSAMQLSA-N 0.000 claims description 3
- 239000008186 active pharmaceutical agent Substances 0.000 claims description 3
- 125000001495 ethyl group Chemical group [H]C([H])([H])C([H])([H])* 0.000 claims description 3
- 125000002757 morpholinyl group Chemical group 0.000 claims description 3
- 239000011159 matrix material Substances 0.000 claims description 2
- 208000035143 Bacterial infection Diseases 0.000 abstract description 2
- 241000124008 Mammalia Species 0.000 abstract description 2
- 208000022362 bacterial infectious disease Diseases 0.000 abstract description 2
- 230000031018 biological processes and functions Effects 0.000 abstract 1
- IAZDPXIOMUYVGZ-WFGJKAKNSA-N Dimethyl sulfoxide Chemical compound [2H]C([2H])([2H])S(=O)C([2H])([2H])[2H] IAZDPXIOMUYVGZ-WFGJKAKNSA-N 0.000 description 44
- YMWUJEATGCHHMB-UHFFFAOYSA-N Dichloromethane Chemical compound ClCCl YMWUJEATGCHHMB-UHFFFAOYSA-N 0.000 description 40
- 239000011541 reaction mixture Substances 0.000 description 39
- 239000000243 solution Substances 0.000 description 39
- WEVYAHXRMPXWCK-UHFFFAOYSA-N Acetonitrile Chemical compound CC#N WEVYAHXRMPXWCK-UHFFFAOYSA-N 0.000 description 35
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 31
- 238000004128 high performance liquid chromatography Methods 0.000 description 30
- 238000010828 elution Methods 0.000 description 29
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 27
- RTZKZFJDLAIYFH-UHFFFAOYSA-N Diethyl ether Chemical compound CCOCC RTZKZFJDLAIYFH-UHFFFAOYSA-N 0.000 description 26
- 238000005160 1H NMR spectroscopy Methods 0.000 description 25
- 238000000034 method Methods 0.000 description 21
- ZMXDDKWLCZADIW-UHFFFAOYSA-N N,N-dimethylformamide Substances CN(C)C=O ZMXDDKWLCZADIW-UHFFFAOYSA-N 0.000 description 20
- 239000000047 product Substances 0.000 description 19
- IAZDPXIOMUYVGZ-UHFFFAOYSA-N Dimethylsulphoxide Chemical compound CS(C)=O IAZDPXIOMUYVGZ-UHFFFAOYSA-N 0.000 description 18
- FVAUCKIRQBBSSJ-UHFFFAOYSA-M sodium iodide Chemical compound [Na+].[I-] FVAUCKIRQBBSSJ-UHFFFAOYSA-M 0.000 description 18
- 0 [1*]C(=O)N(C[C@H]1CN(C2=CC([3*])=C(C3=C[W]C[W]=C3)C([2*])=C2)C(=O)O1)C(=O)OC([4*])OC([5*])=O Chemical compound [1*]C(=O)N(C[C@H]1CN(C2=CC([3*])=C(C3=C[W]C[W]=C3)C([2*])=C2)C(=O)O1)C(=O)OC([4*])OC([5*])=O 0.000 description 17
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 description 16
- 229940125904 compound 1 Drugs 0.000 description 16
- VEXZGXHMUGYJMC-UHFFFAOYSA-N Hydrochloric acid Chemical compound Cl VEXZGXHMUGYJMC-UHFFFAOYSA-N 0.000 description 15
- DTQVDTLACAAQTR-UHFFFAOYSA-N Trifluoroacetic acid Chemical compound OC(=O)C(F)(F)F DTQVDTLACAAQTR-UHFFFAOYSA-N 0.000 description 15
- TVFDJXOCXUVLDH-UHFFFAOYSA-N caesium atom Chemical class [Cs] TVFDJXOCXUVLDH-UHFFFAOYSA-N 0.000 description 14
- 239000000725 suspension Substances 0.000 description 14
- WYURNTSHIVDZCO-UHFFFAOYSA-N Tetrahydrofuran Chemical compound C1CCOC1 WYURNTSHIVDZCO-UHFFFAOYSA-N 0.000 description 12
- NLKNQRATVPKPDG-UHFFFAOYSA-M potassium iodide Chemical compound [K+].[I-] NLKNQRATVPKPDG-UHFFFAOYSA-M 0.000 description 12
- FFDGPVCHZBVARC-UHFFFAOYSA-N N,N-dimethylglycine Chemical compound CN(C)CC(O)=O FFDGPVCHZBVARC-UHFFFAOYSA-N 0.000 description 10
- 239000007787 solid Substances 0.000 description 10
- 125000000999 tert-butyl group Chemical group [H]C([H])([H])C(*)(C([H])([H])[H])C([H])([H])[H] 0.000 description 9
- XEKOWRVHYACXOJ-UHFFFAOYSA-N Ethyl acetate Chemical compound CCOC(C)=O XEKOWRVHYACXOJ-UHFFFAOYSA-N 0.000 description 8
- 229910052757 nitrogen Inorganic materials 0.000 description 8
- 239000000843 powder Substances 0.000 description 8
- NLXLAEXVIDQMFP-UHFFFAOYSA-N Ammonia chloride Chemical compound [NH4+].[Cl-] NLXLAEXVIDQMFP-UHFFFAOYSA-N 0.000 description 7
- 239000000203 mixture Substances 0.000 description 7
- WRJZKSHNBALIGH-UHFFFAOYSA-N 2-piperazin-1-ium-1-ylacetate Chemical compound OC(=O)CN1CCNCC1 WRJZKSHNBALIGH-UHFFFAOYSA-N 0.000 description 6
- VYPSYNLAJGMNEJ-UHFFFAOYSA-N Silicium dioxide Chemical compound O=[Si]=O VYPSYNLAJGMNEJ-UHFFFAOYSA-N 0.000 description 6
- HEDRZPFGACZZDS-MICDWDOJSA-N Trichloro(2H)methane Chemical compound [2H]C(Cl)(Cl)Cl HEDRZPFGACZZDS-MICDWDOJSA-N 0.000 description 6
- 230000002378 acidificating effect Effects 0.000 description 6
- 230000015572 biosynthetic process Effects 0.000 description 6
- 229940125782 compound 2 Drugs 0.000 description 6
- 125000006239 protecting group Chemical group 0.000 description 6
- 235000009518 sodium iodide Nutrition 0.000 description 6
- 238000003786 synthesis reaction Methods 0.000 description 6
- OBNORMCGWHFKGY-UHFFFAOYSA-N 2-[bis[(2-methylpropan-2-yl)oxy]phosphoryloxy]acetic acid Chemical compound CC(C)(C)OP(=O)(OC(C)(C)C)OCC(O)=O OBNORMCGWHFKGY-UHFFFAOYSA-N 0.000 description 5
- 238000003820 Medium-pressure liquid chromatography Methods 0.000 description 5
- 241000699670 Mus sp. Species 0.000 description 5
- KDLHZDBZIXYQEI-UHFFFAOYSA-N Palladium on carbon Substances [Pd] KDLHZDBZIXYQEI-UHFFFAOYSA-N 0.000 description 5
- UIIMBOGNXHQVGW-UHFFFAOYSA-M Sodium bicarbonate Chemical compound [Na+].OC([O-])=O UIIMBOGNXHQVGW-UHFFFAOYSA-M 0.000 description 5
- JIYCJWDHHSPMDM-UHFFFAOYSA-N benzyl ethyl hydrogen phosphate Chemical compound CCOP(O)(=O)OCC1=CC=CC=C1 JIYCJWDHHSPMDM-UHFFFAOYSA-N 0.000 description 5
- 239000000872 buffer Substances 0.000 description 5
- 238000007327 hydrogenolysis reaction Methods 0.000 description 5
- MJMZBXYBWMBFNY-UHFFFAOYSA-N methyl 4-(4-nitrophenoxy)butanoate Chemical compound COC(=O)CCCOC1=CC=C([N+]([O-])=O)C=C1 MJMZBXYBWMBFNY-UHFFFAOYSA-N 0.000 description 5
- 150000003013 phosphoric acid derivatives Chemical class 0.000 description 5
- 238000000746 purification Methods 0.000 description 5
- 229920006395 saturated elastomer Polymers 0.000 description 5
- WRIKHQLVHPKCJU-UHFFFAOYSA-N sodium bis(trimethylsilyl)amide Chemical compound C[Si](C)(C)N([Na])[Si](C)(C)C WRIKHQLVHPKCJU-UHFFFAOYSA-N 0.000 description 5
- 239000002904 solvent Substances 0.000 description 5
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- AFAXGSQYZLGZPG-UHFFFAOYSA-N ethanedisulfonic acid Chemical compound OS(=O)(=O)CCS(O)(=O)=O AFAXGSQYZLGZPG-UHFFFAOYSA-N 0.000 description 1
- CCIVGXIOQKPBKL-UHFFFAOYSA-M ethanesulfonate Chemical compound CCS([O-])(=O)=O CCIVGXIOQKPBKL-UHFFFAOYSA-M 0.000 description 1
- VFRSADQPWYCXDG-LEUCUCNGSA-N ethyl (2s,5s)-5-methylpyrrolidine-2-carboxylate;2,2,2-trifluoroacetic acid Chemical compound OC(=O)C(F)(F)F.CCOC(=O)[C@@H]1CC[C@H](C)N1 VFRSADQPWYCXDG-LEUCUCNGSA-N 0.000 description 1
- OJCSPXHYDFONPU-UHFFFAOYSA-N etoac etoac Chemical compound CCOC(C)=O.CCOC(C)=O OJCSPXHYDFONPU-UHFFFAOYSA-N 0.000 description 1
- 238000011156 evaluation Methods 0.000 description 1
- 239000001530 fumaric acid Substances 0.000 description 1
- 235000011087 fumaric acid Nutrition 0.000 description 1
- 239000007789 gas Substances 0.000 description 1
- 239000000174 gluconic acid Chemical group 0.000 description 1
- 235000012208 gluconic acid Nutrition 0.000 description 1
- 239000004220 glutamic acid Chemical group 0.000 description 1
- 235000013922 glutamic acid Nutrition 0.000 description 1
- 125000005842 heteroatom Chemical group 0.000 description 1
- 229930195733 hydrocarbon Natural products 0.000 description 1
- 150000002430 hydrocarbons Chemical class 0.000 description 1
- 238000001727 in vivo Methods 0.000 description 1
- 239000012442 inert solvent Substances 0.000 description 1
- 238000001990 intravenous administration Methods 0.000 description 1
- 150000002500 ions Chemical class 0.000 description 1
- 125000001449 isopropyl group Chemical group [H]C([H])([H])C([H])(*)C([H])([H])[H] 0.000 description 1
- 239000004310 lactic acid Substances 0.000 description 1
- 235000014655 lactic acid Nutrition 0.000 description 1
- 231100000518 lethal Toxicity 0.000 description 1
- 230000001665 lethal effect Effects 0.000 description 1
- 238000001294 liquid chromatography-tandem mass spectrometry Methods 0.000 description 1
- 239000008297 liquid dosage form Substances 0.000 description 1
- ANYSGBYRTLOUPO-UHFFFAOYSA-N lithium tetramethylpiperidide Chemical compound [Li]N1C(C)(C)CCCC1(C)C ANYSGBYRTLOUPO-UHFFFAOYSA-N 0.000 description 1
- VZCYOOQTPOCHFL-UPHRSURJSA-N maleic acid Chemical compound OC(=O)\C=C/C(O)=O VZCYOOQTPOCHFL-UPHRSURJSA-N 0.000 description 1
- 239000011976 maleic acid Substances 0.000 description 1
- 239000001630 malic acid Substances 0.000 description 1
- 235000011090 malic acid Nutrition 0.000 description 1
- 229960002510 mandelic acid Drugs 0.000 description 1
- 238000004949 mass spectrometry Methods 0.000 description 1
- COTNUBDHGSIOTA-UHFFFAOYSA-N meoh methanol Chemical compound OC.OC COTNUBDHGSIOTA-UHFFFAOYSA-N 0.000 description 1
- 230000004060 metabolic process Effects 0.000 description 1
- 229910021645 metal ion Inorganic materials 0.000 description 1
- 229940098779 methanesulfonic acid Drugs 0.000 description 1
- QARBMVPHQWIHKH-UHFFFAOYSA-N methanesulfonyl chloride Chemical compound CS(Cl)(=O)=O QARBMVPHQWIHKH-UHFFFAOYSA-N 0.000 description 1
- WBYWAXJHAXSJNI-UHFFFAOYSA-N methyl p-hydroxycinnamate Natural products OC(=O)C=CC1=CC=CC=C1 WBYWAXJHAXSJNI-UHFFFAOYSA-N 0.000 description 1
- 230000000813 microbial effect Effects 0.000 description 1
- 150000007522 mineralic acids Chemical class 0.000 description 1
- KVBGVZZKJNLNJU-UHFFFAOYSA-N naphthalene-2-sulfonic acid Chemical compound C1=CC=CC2=CC(S(=O)(=O)O)=CC=C21 KVBGVZZKJNLNJU-UHFFFAOYSA-N 0.000 description 1
- 229910017604 nitric acid Inorganic materials 0.000 description 1
- QIQXTHQIDYTFRH-UHFFFAOYSA-N octadecanoic acid Chemical group CCCCCCCCCCCCCCCCCC(O)=O QIQXTHQIDYTFRH-UHFFFAOYSA-N 0.000 description 1
- OQCDKBAXFALNLD-UHFFFAOYSA-N octadecanoic acid Chemical group CCCCCCCC(C)CCCCCCCCC(O)=O OQCDKBAXFALNLD-UHFFFAOYSA-N 0.000 description 1
- 150000007524 organic acids Chemical class 0.000 description 1
- 235000005985 organic acids Nutrition 0.000 description 1
- 150000007530 organic bases Chemical class 0.000 description 1
- 229910052760 oxygen Inorganic materials 0.000 description 1
- 239000001301 oxygen Substances 0.000 description 1
- FJKROLUGYXJWQN-UHFFFAOYSA-N papa-hydroxy-benzoic acid Chemical group OC(=O)C1=CC=C(O)C=C1 FJKROLUGYXJWQN-UHFFFAOYSA-N 0.000 description 1
- 239000002245 particle Substances 0.000 description 1
- 244000052769 pathogen Species 0.000 description 1
- 239000008188 pellet Substances 0.000 description 1
- 239000010452 phosphate Substances 0.000 description 1
- 239000002953 phosphate buffered saline Substances 0.000 description 1
- 229910052698 phosphorus Inorganic materials 0.000 description 1
- 239000011574 phosphorus Substances 0.000 description 1
- 125000003386 piperidinyl group Chemical group 0.000 description 1
- IUGYQRQAERSCNH-UHFFFAOYSA-N pivalic acid Chemical compound CC(C)(C)C(O)=O IUGYQRQAERSCNH-UHFFFAOYSA-N 0.000 description 1
- IUBQJLUDMLPAGT-UHFFFAOYSA-N potassium bis(trimethylsilyl)amide Chemical compound C[Si](C)(C)N([K])[Si](C)(C)C IUBQJLUDMLPAGT-UHFFFAOYSA-N 0.000 description 1
- WSHYKIAQCMIPTB-UHFFFAOYSA-M potassium;2-oxo-3-(3-oxo-1-phenylbutyl)chromen-4-olate Chemical compound [K+].[O-]C=1C2=CC=CC=C2OC(=O)C=1C(CC(=O)C)C1=CC=CC=C1 WSHYKIAQCMIPTB-UHFFFAOYSA-M 0.000 description 1
- 238000002360 preparation method Methods 0.000 description 1
- 235000019260 propionic acid Nutrition 0.000 description 1
- 125000001436 propyl group Chemical group [H]C([*])([H])C([H])([H])C([H])([H])[H] 0.000 description 1
- 229940107700 pyruvic acid Drugs 0.000 description 1
- IUVKMZGDUIUOCP-BTNSXGMBSA-N quinbolone Chemical compound O([C@H]1CC[C@H]2[C@H]3[C@@H]([C@]4(C=CC(=O)C=C4CC3)C)CC[C@@]21C)C1=CCCC1 IUVKMZGDUIUOCP-BTNSXGMBSA-N 0.000 description 1
- 125000006413 ring segment Chemical group 0.000 description 1
- 229960004889 salicylic acid Drugs 0.000 description 1
- 238000013207 serial dilution Methods 0.000 description 1
- 235000017557 sodium bicarbonate Nutrition 0.000 description 1
- 239000011780 sodium chloride Substances 0.000 description 1
- 239000007909 solid dosage form Substances 0.000 description 1
- 241000894007 species Species 0.000 description 1
- 238000012421 spiking Methods 0.000 description 1
- 239000008117 stearic acid Chemical group 0.000 description 1
- 238000006467 substitution reaction Methods 0.000 description 1
- 229910052717 sulfur Inorganic materials 0.000 description 1
- 239000011593 sulfur Substances 0.000 description 1
- 230000004083 survival effect Effects 0.000 description 1
- 230000009885 systemic effect Effects 0.000 description 1
- 239000011975 tartaric acid Substances 0.000 description 1
- 235000002906 tartaric acid Nutrition 0.000 description 1
- 150000005622 tetraalkylammonium hydroxides Chemical class 0.000 description 1
- WHRNULOCNSKMGB-UHFFFAOYSA-N tetrahydrofuran thf Chemical compound C1CCOC1.C1CCOC1 WHRNULOCNSKMGB-UHFFFAOYSA-N 0.000 description 1
- PHCBRBWANGJMHS-UHFFFAOYSA-J tetrasodium;disulfate Chemical compound [Na+].[Na+].[Na+].[Na+].[O-]S([O-])(=O)=O.[O-]S([O-])(=O)=O PHCBRBWANGJMHS-UHFFFAOYSA-J 0.000 description 1
- WROMPOXWARCANT-UHFFFAOYSA-N tfa trifluoroacetic acid Chemical compound OC(=O)C(F)(F)F.OC(=O)C(F)(F)F WROMPOXWARCANT-UHFFFAOYSA-N 0.000 description 1
- JOXIMZWYDAKGHI-UHFFFAOYSA-N toluene-4-sulfonic acid Chemical compound CC1=CC=C(S(O)(=O)=O)C=C1 JOXIMZWYDAKGHI-UHFFFAOYSA-N 0.000 description 1
- LENZDBCJOHFCAS-UHFFFAOYSA-N tris Chemical compound OCC(N)(CO)CO LENZDBCJOHFCAS-UHFFFAOYSA-N 0.000 description 1
- 229960000281 trometamol Drugs 0.000 description 1
- 210000003462 vein Anatomy 0.000 description 1
- 238000003260 vortexing Methods 0.000 description 1
- 238000005303 weighing Methods 0.000 description 1
- 210000000707 wrist Anatomy 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D487/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
- C07D487/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
- C07D487/04—Ortho-condensed systems
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/04—Antibacterial agents
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
Definitions
- This invention relates to compounds that are prodrugs of antimicrobial oxazolidinones.
- the invention also relates to pharmaceutical formulations of the compounds, and to methods of using the compounds to treat patients afflicted with various bacterial infections.
- Oxazolidinones are identified as a class of synthetic antimicrobial compounds, and possess activity against a variety of pathogens. Because of the increasing development of bacterial resistance to many antibiotics, oxazolidinones will play an important role in the treatment of infections.
- variable moieties in Formula (A) are as described in the specification of the above-referenced published application. Forty-two specific compounds were identified as compounds that were synthesized and that fall within the limits of Formula (A).
- the invention relates to oxazolidinone prodrug compounds having the Formula (I):
- R is a leaving group that undergoes a reaction in a biological matrix to produce the active ingredient of the structure of Compound 1:
- the invention also relates to oxazolidinone prodrugs of Formula (TI):
- n 0, 1, 2, 3 or 4;
- This invention also relates to pharmaceutical formulations including an oxazolidinone prodrug of Formula (I) or (II) as active pharmaceutical ingredient, and one or more pharmaceutically acceptable excipients, diluents, fillers, or the like to form a solid or liquid dosage form adapted for administration by oral or parenteral routes to warm-blooded mammals, including humans.
- the invention also relates to methods for treating patients suffering from microbial diseases by administering an effective amount of a compound of Formula (I) or (II) or a pharmaceutical formulation comprising a Formula (I) or (II) compound and one or more pharmaceutically acceptable excipients, diluents, fillers, or the like.
- the oxazolidinone prodrugs of Formula (II) include compounds wherein:
- n 1;
- the oxazolidinone prodrugs of Formula (II) include compounds wherein:
- n 1;
- the oxazolidinone prodrugs of Formula (II) include compounds wherein X is selected from the group consisting of amino optionally substituted by one or two methyl; and, piperazinyl optionally substituted by one methyl.
- Lower alkyl means a fully saturated straight chain or branched chain hydrocarbon containing from one to no more than eight total carbon atoms.
- Examples of lower alkyl groups include methyl, ethyl, propyl, isopropyl, butyl, t-butyl, and others.
- Heterocyclyl means a cyclic moiety of one or more rings, fused or unfused, wherein at least one ring atom is a non-carbon atom. Preferred heteroatoms include oxygen, nitrogen, sulfur and phosphorus, or any combination of two or more of those atoms. Examples of heterocyclic groups include pyrrolidinyl, piperidinyl, piperazinyl, morpholinyl, and others.
- “Optionally substituted by” means the substitution of the listed groups for one or more hydrogen atoms thereof.
- Prodrug means a precursor to a pharmaceutically active drug, which is converted into the active drug in the body by normal metabolic processes.
- “Pharmaceutically acceptable salt” means a salt that is pharmaceutically acceptable and that possesses the desired pharmacological activity of the parent compound.
- Such salts include: (1) acid addition salts, formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like; or formed with organic acids such as acetic acid, propionic acid, hexanoic acid, cyclopentanepropionic acid, glycolic acid, pyruvic acid, lactic acid, malonic acid, succinic acid, malic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, o-(4-hydroxybenzoyl)benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, 1,2-ethanedisulfonic acid, 2-hydroxyethanesulfonic acid, benzenesulfonic acid, 4-
- Compounds of this invention according to Formula (I) or Formula (II) are useful as prodrugs of the active ingredient (Compound 1) disclosed above.
- the oxazolidinone prodrugs of Formula (II) include compounds selected from the group consisting of:
- the oxazolidinone prodrugs of Formula (II) include compounds selected from the group consisting of:
- the oxazolidinone prodrugs of Formula (II) include compounds selected from the group consisting of:
- Compound 1 is possessed of antimicrobial properties as described in U.S. Pat. No. 6,413,981, which is incorporated herein by reference.
- compounds of this invention include the following:
- the compounds of Formula (II) may be prepared from Compound 1, the synthesis of Compound 1 is described in U.S. Pat. No. 6,413,981. Outlined in Schemes 1 through 5 are representative procedures to prepare the compounds of the instant invention.
- Scheme 1 illustrates the method of synthesis of the chloroalkoxycarbonyl precursors (2) to the compounds of the invention.
- Compound 1 is reacted with a chloroalkyl chloro formate derivative in the presence of a base.
- bases include sodium hexamethyldisilazide, potassium hexamethyldisilazide, lithium diisopropylamide (LDA), lithium tetramethylpiperidide, 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU), tetramethylguanidine, and others.
- the reaction is preferably run for between 30 min to 24 h in an inert solvent such as THF, dioxane, 1,2-dimethoxyethane (DME), or DMF at a temperature ranging from ⁇ 78° C. to 80° C.
- an inert solvent such as THF, dioxane, 1,2-dimethoxyethane (DME), or DMF at a temperature ranging from ⁇ 78° C. to 80° C.
- Scheme 2 depicts the conversion of the chloroalkoxycarbonyl derivatives (2) from Scheme 1 to a variety of compounds of the instant invention, including the substituted acyloxymethoxycarbonyl derivatives of Formula (III), wherein R 1 , X and n are as defined above.
- derivative 2 is reacted with an alkali metal (preferably cesium) salt of an appropriately substituted carboxylic acid derivative.
- the reaction is optionally performed in the presence of an iodide salt, such as potassium iodide or sodium iodide, in a suitable solvent such as DMF, acetonitrile, or DMSO.
- the reaction is performed at a temperature ranging from 0° C. to 100° C. for from 2 h to 48 h.
- a protecting group is present in the compound of Formula (III), it may optionally be removed by methods known to those skilled in the art to provide compounds of Formula (III) in which the protecting group has been replaced by a hydrogen atom.
- Amine protecting groups include, but are not limited to, tert-butyloxycarbonyl (Boc), which may be removed under acidic conditions, for example by treatment with trifluoroacetic acid in DCM or HCl in ethyl ether, and carbobenzyloxy (Cbz), which may be removed by hydrogenolysis.
- Phosphate protecting groups include, but are not limited to, tert-butyl ( t Bu), which may be removed under acidic conditions, such as by treatment with trifluoroacetic acid in DCM or HCl in ethyl ether, and benzyl (Bn), which may be removed by hydrogenolysis.
- t Bu tert-butyl
- Bn benzyl
- Scheme 3 illustrates the synthesis of compounds of Formula IV from derivative Compound 2.
- the process is similar to the one described in Scheme 2.
- Derivative Compound 2 is reacted with an alkali metal (preferably cesium) salt of a suitably substituted benzoic acid derivative to provide compounds of Formula (IV).
- an alkali metal (preferably cesium) salt of a suitably substituted benzoic acid derivative to provide compounds of Formula (IV).
- the reaction is conducted in a suitable solvent, such as DMF, acetonitrile, or DMSO at a temperature ranging from 0° C. to 100° C. for from 2 h to 48 h, optionally in the presence of an iodide salt, such as potassium iodide or sodium iodide.
- a protecting group is present in the compounds of Formula (IV), it may optionally be removed by methods known to those skilled in the art to provide compounds of Formula (IV) in which the protecting group has been replaced by a hydrogen atom.
- Phosphate protecting groups include, but are not limited to, tert-butyl ( t Bu), which may be removed under acidic conditions, such as by treatment with trifluoroacetic acid in DCM or HCl in ethyl ether, and benzyl (Bn), which may be removed by hydrogenolysis.
- Scheme 4 illustrates the synthesis of phosphate ester compounds of Formula (V) from derivative Compound 2.
- derivative Compound 2 is reacted with a suitably protected salt of a phosphoric acid diester derivative.
- the reaction is optionally performed in the presence of an iodide salt, such as potassium iodide or sodium iodide, in an appropriate solvent, such as DMF, THF, or DMSO.
- the reaction is preferably performed at a temperature ranging from 0° C. to 100° C. for from 2 h to 96 h, followed by removal of the PG 1 protecting group to provide compounds of Formula (V) wherein R 3 is lower alkyl.
- Preferred phosphate salts are those in which Z+is tetraalkylammonium, which may be prepared by exchange of the t-butylamine salt with a tetraalkylammonium hydroxide derivative.
- Phosphate protecting groups include, but are not limited to, tert-butyl ( t Bu), which may be removed under acidic conditions, such as by treatment with trifluoroacetic acid in DCM or HCl in ethyl ether, and benzyl (Bn), which may be removed by hydrogenolysis.
- Scheme 5 illustrates the synthesis of phosphate compounds of Formula (VI) from derivative Compound 2.
- derivative Compound 2 is reacted with a suitably protected salt of a phosphoric acid diester derivative to produce compounds of Formula (VI).
- the reaction is optionally performed in the presence of an iodide salt, such as potassium iodide or sodium iodide, in an appropriate solvent, such as DMF, THF, or DMSO, at a temperature ranging from 0° C. to 100° C. for from 2 h to 96 h, followed by removal of the PG 1 protecting groups.
- Preferred phosphate salts are those in which Z + is tetraalkylammonium.
- Phosphate protecting groups include, but are not limited to, tert-butyl ( t Bu), which may be removed under acidic conditions, such as by treatment with trifluoroacetic acid in DCM or HCl in ethyl ether, and benzyl (Bn), which may be removed by hydrogenolysis.
- t Bu tert-butyl
- Bn benzyl
- Morpholin-4-yl-acetic acid acetyl- ⁇ (R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl ⁇ -carbamoyloxy)-methyl ester (6)
- the first step in this reaction sequence was carried out according to a procedure described in Gray, M. D. M.; Smith, D. J. H. Tetrahedron. Lett. 1980, 21, 859.
- a solution of phosphoric acid dibenzyl ester ethyl ester (5.22 g, 17.05 mmol) in tert-butylamine (10 mL) was heated at 92° C. (oil bath temperature) in a sealed tube for 8 h. Upon cooling to rt a white waxy solid formed.
- tetrabutylammonium hydroxide 11.37 mL, 17.05 mmol
- Step 1 To a solution of benzyl glycolate (2.0 mL, 14.1 mmol) and triethylamine (2.35 mL, 16.9 mmol) in dichloromethane (30 mL) at 0° C. was added dropwise methanesulfonyl chloride (1.20 mL, 15.1 mL). The reaction was stirred overnight, diluted with dichloromethane, washed with saturated aqueous NH 4 Cl, and then with saturated NaHCO 3 , dried with Na 2 SO 4 , and concentrated in vacuo to give 2.50 g (73%) of methanesulfonyloxy-acetic acid benzyl ester which was used in the next step without further purification.
- Step 2 To a solution of methanesulfonyloxy-acetic acid benzyl ester (2.50 g, 10.24 mmol) in THF (20 mL) was added the tetrabutylammonium salt of di-tert-butylphosphate (4.61 g, 10.24 mmol). The reaction was stirred overnight, concentrated, and purified directly by MPLC (SiO 2 , 10-30% gradient elution, Hexane: EtOAc) to give 1.42 g (39%) of (di-tert-butoxy-phosphoryloxy)-acetic acid benzyl ester.
- 1 H NMR 400 MHz, CDCl 3 ): ⁇ 7.37-7.35 (m, 5H), 5.21 (s, 2H), 4.55 (d, 2H), and 1.48 (s, 18H).
- Step 3 (Di-tert-butoxy-phosphoryloxy)-acetic acid benzyl ester (700 mg, 1.96 mmol) was dissolved in MeOH (40 mL) and passed through a “H-cube” hydrogenator with a 10% Pd on carbon cartridge under 40 psi of hydrogen at a flow rate of 1 mL/min. The reaction mixture was concentrated in vacuo to give 513 mg (98%) of (di-tert-butoxy-phosphoryloxy)-acetic acid, which was used in the next step without further purification.
- 1 H NMR 400 MHz, CDCl 3 ): ⁇ 4.53 (d, 2H), and 1.51 (s, 18H).
- Step 4 To a solution of (di-tert-butoxy-phosphoryloxy)-acetic acid (480 mg, 1.79 mmol) in MeOH (4 mL) and water (2 mL) was added cesium carbonate (261 mg, 0.80 mmol) and the reaction was stirred at rt for 10 min. The resulting homogenous solution was concentrated in vacuo to give the title compound as a gummy solid.
- the solubility of the active drug, Compound 1 was determined in a separate experiment in which an excess of the compound was added to pH 4 buffer. The mixture was shaken with a Burrell wrist action shaker at ambient temperature for 24 hours. Excess solute was removed by centrifugation, the supernatant was diluted with a suitable solvent, and the concentration of the compound was measured using HPLC. The solubility of Compound 1 at pH 4 was 0.007 mg/mL.
- mice Female Swiss Webster mice weighing between 20-25 g were infected intraperitoneally with approximately 5 ⁇ 10 5 colony forming units (CFU) S. aureus Smith in 7% mucin. One hour later, the animals were given prodrug or Compound 1 intravenously or orally in a dose volume of 0.1 mL/10 g body weight. Each group consisted of eight animals.
- the prodrugs were prepared immediately before dosing in 40 mM sodium citrate buffer, pH 4.
- Compound 1 was prepared in 20% HP ⁇ CD and warmed until dissolved (IV dosing) or in 0.5% methocel (PO dosing) as a suspension. The mice were observed over a three day period and ED 50 values were calculated from the resulting % survival curves (Table 2). The term “ND” means not determined.
- the prodrug ED 50 values were normalized to the content of Compound 1.
- prodrug intravenously (mice, rats, or dogs) or orally (mice).
- the prodrugs were prepared immediately before dosing in 40 mM sodium citrate buffer, pH 4.
- Compound 1 was prepared in 20% HP ⁇ CD and warmed until dissolved (IV dosing), or in 0.5% methocel as a suspension (PO dosing).
- IV dosing dissolved (IV dosing)
- PO dosing 0.5% methocel as a suspension
- blood was removed (via cardiac puncture in euthanized mice, via orbital sinus puncture in anesthetized rats, or via cephalic vein in conscious dogs) and 200 ⁇ L of the plasma supernatant was immediately frozen ( ⁇ 70° C.).
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Abstract
Description
- This present application claims benefit of U.S. Provisional Patent Application Ser. No. 60/820,497, filed Jul. 27, 2006 and U.S. Provisional Patent Application Ser. No. 60/848,659, filed Oct. 2, 2006, which are incorporated herein by reference in their entirety and for all purposes.
- This invention relates to compounds that are prodrugs of antimicrobial oxazolidinones. The invention also relates to pharmaceutical formulations of the compounds, and to methods of using the compounds to treat patients afflicted with various bacterial infections.
- Oxazolidinones are identified as a class of synthetic antimicrobial compounds, and possess activity against a variety of pathogens. Because of the increasing development of bacterial resistance to many antibiotics, oxazolidinones will play an important role in the treatment of infections.
- Issues common to many oxazolidinones have been low absorption rate and poor water solubility. The development and administration of prodrugs can at times improve the pharmacological properties of oxazolidinones, as well as other drugs. Development of prodrugs is also often geared to enhancing water solubility, which simplifies the development of pharmaceutical formulations intended for intravenous administration. International Publication Number WO 2005/028473, published Mar. 31, 2005, identifies some possible prodrugs for certain oxazolidinones, namely acyloxymethylcarbamate derivatives according to the Formula (A) disclosed in the above publication:
- The variable moieties in Formula (A) are as described in the specification of the above-referenced published application. Forty-two specific compounds were identified as compounds that were synthesized and that fall within the limits of Formula (A).
- The invention relates to oxazolidinone prodrug compounds having the Formula (I):
- wherein R is a leaving group that undergoes a reaction in a biological matrix to produce the active ingredient of the structure of Compound 1:
- Compound 1 is described in detail in U.S. Pat. No. 6,413,981, which is incorporated herein by reference.
- The invention also relates to oxazolidinone prodrugs of Formula (TI):
- wherein:
- R1 is hydrogen or lower alkyl;
- R2 is selected from the group consisting of
- wherein, n is 0, 1, 2, 3 or 4;
- X is selected from the group consisting of amino optionally substituted by one or two lower alkyl; heterocyclyl optionally substituted by one or more lower alkyl; and —O—PO3H2 or an alkyl ester thereof,
- Y is selected from the group consisting of —CH2O—PO3H2 or an alkyl ester thereof, and —O—PO3H2 or an alkyl ester thereof,
- R3 is hydrogen or lower alkyl; or
a pharmaceutically acceptable salt thereof. - This invention also relates to pharmaceutical formulations including an oxazolidinone prodrug of Formula (I) or (II) as active pharmaceutical ingredient, and one or more pharmaceutically acceptable excipients, diluents, fillers, or the like to form a solid or liquid dosage form adapted for administration by oral or parenteral routes to warm-blooded mammals, including humans.
- The invention also relates to methods for treating patients suffering from microbial diseases by administering an effective amount of a compound of Formula (I) or (II) or a pharmaceutical formulation comprising a Formula (I) or (II) compound and one or more pharmaceutically acceptable excipients, diluents, fillers, or the like.
- In embodiments of the present invention, the oxazolidinone prodrugs of Formula (II) include compounds wherein:
- R1 is hydrogen or lower alkyl;
- R2 is selected from the group consisting of
- wherein n is 1;
- X is selected from the group consisting of amino optionally substituted by one or two lower alkyl; and, heterocyclyl, optionally substituted by one or more lower alkyl;
- R3 is lower alkyl; or
a pharmaceutically acceptable salt thereof. - In an embodiment of the present invention, the oxazolidinone prodrugs of Formula (II) include compounds wherein:
- R1 is hydrogen or methyl;
- R2 is selected from the group consisting of
- wherein n is 1;
- X is selected from the group consisting of amino optionally substituted by one or two methyl; and, pyrrolidinyl, piperazinyl or morpholinyl, optionally substituted on pyrrolidinyl or piperazinyl by one methyl;
- R3 is ethyl; or
a pharmaceutically acceptable salt thereof. - In an embodiment of the present invention, the oxazolidinone prodrugs of Formula (II) include compounds wherein X is selected from the group consisting of amino optionally substituted by one or two methyl; and, piperazinyl optionally substituted by one methyl.
- As used herein, these terms of art have the following meaning:
- “Lower alkyl” means a fully saturated straight chain or branched chain hydrocarbon containing from one to no more than eight total carbon atoms. Examples of lower alkyl groups include methyl, ethyl, propyl, isopropyl, butyl, t-butyl, and others.
- “Heterocyclyl” means a cyclic moiety of one or more rings, fused or unfused, wherein at least one ring atom is a non-carbon atom. Preferred heteroatoms include oxygen, nitrogen, sulfur and phosphorus, or any combination of two or more of those atoms. Examples of heterocyclic groups include pyrrolidinyl, piperidinyl, piperazinyl, morpholinyl, and others.
- “Optionally substituted by” means the substitution of the listed groups for one or more hydrogen atoms thereof.
- “Prodrug” means a precursor to a pharmaceutically active drug, which is converted into the active drug in the body by normal metabolic processes.
- “Pharmaceutically acceptable salt” means a salt that is pharmaceutically acceptable and that possesses the desired pharmacological activity of the parent compound. Such salts include: (1) acid addition salts, formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like; or formed with organic acids such as acetic acid, propionic acid, hexanoic acid, cyclopentanepropionic acid, glycolic acid, pyruvic acid, lactic acid, malonic acid, succinic acid, malic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, o-(4-hydroxybenzoyl)benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, 1,2-ethanedisulfonic acid, 2-hydroxyethanesulfonic acid, benzenesulfonic acid, 4-chlorobenzenesulfonic acid, 2-naphthalenesulfonic acid, 4-toluenesulfonic acid, camphorsulfonic acid, 4-methylbicyclo[2.2.2]oct-2-ene-1-carboxylic acid, glucoheptonic acid, 4,4′-methylenebis(3-hydroxy-2-ene-1-carboxylic acid), 3-phenylpropionic acid, trimethylacetic acid, tertiary butylacetic acid, lauryl sulfuric acid, gluconic acid, glutamic acid, hydroxynaphthoic acid, salicylic acid, stearic acid, muconic acid, and the like; or (2) salts formed when an acidic proton present in the parent compound either is replaced by a metal ion, e.g., an alkali metal ion, an alkaline earth ion, or an aluminum ion; or coordinates with an organic base such as ethanolamine, triethanolamine, tromethamine, N-methylglucamine, and the like.
- Compounds of this invention according to Formula (I) or Formula (II) are useful as prodrugs of the active ingredient (Compound 1) disclosed above.
- In an embodiment of the present invention, the oxazolidinone prodrugs of Formula (II) include compounds selected from the group consisting of:
-
Cpd Name 4a Piperazin-1-yl-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 4b Piperazin-1-yl-acetic acid 1-(acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro- 4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-ethyl ester, 5 Dimethylamino-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 6 Morpholin-4-yl-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 7 1-Methyl-pyrrolidine-2-carboxylic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6- dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 8 (4-Methyl-piperazin-1-yl)-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6- dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 9 (tert-Butoxycarbonyl-methyl-amino)-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2- methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5- ylmethyl}-carbamoyloxy)-methyl ester, 10 Methylamino-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 11 (S)-Pyrrolidine-1,2-dicarboxylic acid 2-[(acetyl-{(R)-3-[3-fluoro-4-(2-methyl- 2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5- ylmethyl}-carbamoyloxy)-methyl]ester 1-tert-butyl ester, 12 (S)-Pyrrolidine-2-carboxylic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6- dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 13 4-(Bis-benzyloxy-phosphoryloxymethyl)-benzoic acid (acetyl-{(R)-3-[3-fluoro- 4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo- oxazolidin-5-ylmethyl}-carbamoyloxy)-methyl ester, 14 4-Phosphonooxymethyl-benzoic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6- dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 15 4-(Bis-benzyloxy-phosphoryloxy)-benzoic acid (acetyl-{(R)-3-[3-fluoro-4-(2- methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5- ylmethyl}-carbamoyloxy)-methyl ester, 16 4-Phosphonooxy-benzoic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro- 4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 17a Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid di-tert-butoxy- phosphoryloxymethyl ester, 17b Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid 1-(di-tert-butoxy- phosphoryloxy)-ethyl ester, 18a Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid phosphonooxymethyl ester, 18b Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid 1-phosphonooxy-ethyl ester, 20a Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid benzyloxy-ethoxy- phosphoryloxymethyl ester, 20b Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid 1-(benzyloxy-ethoxy- phosphoryloxy)-ethyl ester, 21a Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid ethoxy-hydroxy- phosphoryloxymethyl ester, 21b Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid 1-(ethoxy-hydroxy- phosphoryloxy)-ethyl ester, 23 (Di-tert-butoxy-phosphoryloxy)-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl- 2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5- ylmethyl}-carbamoyloxy)-methyl ester, and 24 Phosphonooxy-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester. - In an embodiment of the present invention, the oxazolidinone prodrugs of Formula (II) include compounds selected from the group consisting of:
-
Cpd Name 4a Piperazin-1-yl-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 4b Piperazin-1-yl-acetic acid 1-(acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro- 4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-ethyl ester, 5 Dimethylamino-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 6 Morpholin-4-yl-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 7 1-Methyl-pyrrolidine-2-carboxylic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6- dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 8 (4-Methyl-piperazin-1-yl)-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6- dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 10 Methylamino-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 12 (S)-Pyrrolidine-2-carboxylic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6- dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 14 4-Phosphonooxymethyl-benzoic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6- dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 16 4-Phosphonooxy-benzoic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro- 4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 18a Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid phosphonooxymethyl ester, 18b Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid 1-phosphonooxy-ethyl ester, 21a Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid ethoxy-hydroxy- phosphoryloxymethyl ester, 21b Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid 1-(ethoxy-hydroxy- phosphoryloxy)-ethyl ester, and 24 Phosphonooxy-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester. - In an embodiment of the present invention, the oxazolidinone prodrugs of Formula (II) include compounds selected from the group consisting of:
-
Cpd Name 4a Piperazin-1-yl-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 4b Piperazin-1-yl-acetic acid 1-(acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro- 4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-ethyl ester, 5 Dimethylamino-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 8 (4-Methyl-piperazin-1-yl)-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6- dihydro-4H-pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, 10 Methylamino-acetic acid (acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H- pyrrolo[3,4-c]pyrazol-5-yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}- carbamoyloxy)-methyl ester, and 21a Acetyl-{(R)-3-[3-fluoro-4-(2-methyl-2,6-dihydro-4H-pyrrolo[3,4-c]pyrazol-5- yl)-phenyl]-2-oxo-oxazolidin-5-ylmethyl}-carbamic acid ethoxy-hydroxy- phosphoryloxymethyl ester. - Compound 1 is possessed of antimicrobial properties as described in U.S. Pat. No. 6,413,981, which is incorporated herein by reference.
- With reference to U.S. Pat. No. 6,413,981, compounds of this invention include the following:
- Abbreviations used in the instant specification and their meanings are as follows:
-
Abbreviation Meaning Boc tert-butoxycarbonyl DCM dichloromethane DMF dimethylformamide DMSO dimethyl sulfoxide Eq or equiv equivalent EtOAc ethyl acetate g grams h hours HPLC high performance liquid chromatography M molar MeOH methanol mg milligram min minutes mL milliliter HCl hydrochloric acid MS mass spectrometry MPLC medium pressure liquid chromatography N normal NaHCO3 sodium bicarbonate NaHMDS sodium hexamethyldisilazide Na2SO4 sodium sulfate NH4Cl ammonium chloride NMR nuclear magnetic resonance psi pounds per square inch (gas) rt or RT room temperature TFA trifluoroacetic acid THF tetrahydrofuran - The compounds of Formula (II) may be prepared from Compound 1, the synthesis of Compound 1 is described in U.S. Pat. No. 6,413,981. Outlined in Schemes 1 through 5 are representative procedures to prepare the compounds of the instant invention.
- Scheme 1 illustrates the method of synthesis of the chloroalkoxycarbonyl precursors (2) to the compounds of the invention. Compound 1 is reacted with a chloroalkyl chloro formate derivative in the presence of a base. Preferred bases include sodium hexamethyldisilazide, potassium hexamethyldisilazide, lithium diisopropylamide (LDA), lithium tetramethylpiperidide, 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU), tetramethylguanidine, and others. The reaction is preferably run for between 30 min to 24 h in an inert solvent such as THF, dioxane, 1,2-dimethoxyethane (DME), or DMF at a temperature ranging from −78° C. to 80° C.
- Scheme 2 depicts the conversion of the chloroalkoxycarbonyl derivatives (2) from Scheme 1 to a variety of compounds of the instant invention, including the substituted acyloxymethoxycarbonyl derivatives of Formula (III), wherein R1, X and n are as defined above. As shown in Scheme 2, derivative 2 is reacted with an alkali metal (preferably cesium) salt of an appropriately substituted carboxylic acid derivative. The reaction is optionally performed in the presence of an iodide salt, such as potassium iodide or sodium iodide, in a suitable solvent such as DMF, acetonitrile, or DMSO. The reaction is performed at a temperature ranging from 0° C. to 100° C. for from 2 h to 48 h. If a protecting group is present in the compound of Formula (III), it may optionally be removed by methods known to those skilled in the art to provide compounds of Formula (III) in which the protecting group has been replaced by a hydrogen atom. Amine protecting groups include, but are not limited to, tert-butyloxycarbonyl (Boc), which may be removed under acidic conditions, for example by treatment with trifluoroacetic acid in DCM or HCl in ethyl ether, and carbobenzyloxy (Cbz), which may be removed by hydrogenolysis. Phosphate protecting groups include, but are not limited to, tert-butyl (tBu), which may be removed under acidic conditions, such as by treatment with trifluoroacetic acid in DCM or HCl in ethyl ether, and benzyl (Bn), which may be removed by hydrogenolysis.
- Scheme 3 illustrates the synthesis of compounds of Formula IV from derivative Compound 2. The process is similar to the one described in Scheme 2. Derivative Compound 2 is reacted with an alkali metal (preferably cesium) salt of a suitably substituted benzoic acid derivative to provide compounds of Formula (IV). Typically the reaction is conducted in a suitable solvent, such as DMF, acetonitrile, or DMSO at a temperature ranging from 0° C. to 100° C. for from 2 h to 48 h, optionally in the presence of an iodide salt, such as potassium iodide or sodium iodide. If a protecting group is present in the compounds of Formula (IV), it may optionally be removed by methods known to those skilled in the art to provide compounds of Formula (IV) in which the protecting group has been replaced by a hydrogen atom. Phosphate protecting groups include, but are not limited to, tert-butyl (tBu), which may be removed under acidic conditions, such as by treatment with trifluoroacetic acid in DCM or HCl in ethyl ether, and benzyl (Bn), which may be removed by hydrogenolysis.
- Scheme 4 illustrates the synthesis of phosphate ester compounds of Formula (V) from derivative Compound 2. As shown in Scheme 4, derivative Compound 2 is reacted with a suitably protected salt of a phosphoric acid diester derivative. The reaction is optionally performed in the presence of an iodide salt, such as potassium iodide or sodium iodide, in an appropriate solvent, such as DMF, THF, or DMSO. The reaction is preferably performed at a temperature ranging from 0° C. to 100° C. for from 2 h to 96 h, followed by removal of the PG1 protecting group to provide compounds of Formula (V) wherein R3 is lower alkyl. Preferred phosphate salts are those in which Z+is tetraalkylammonium, which may be prepared by exchange of the t-butylamine salt with a tetraalkylammonium hydroxide derivative. Phosphate protecting groups include, but are not limited to, tert-butyl (tBu), which may be removed under acidic conditions, such as by treatment with trifluoroacetic acid in DCM or HCl in ethyl ether, and benzyl (Bn), which may be removed by hydrogenolysis.
- Scheme 5 illustrates the synthesis of phosphate compounds of Formula (VI) from derivative Compound 2. As shown, derivative Compound 2 is reacted with a suitably protected salt of a phosphoric acid diester derivative to produce compounds of Formula (VI). The reaction is optionally performed in the presence of an iodide salt, such as potassium iodide or sodium iodide, in an appropriate solvent, such as DMF, THF, or DMSO, at a temperature ranging from 0° C. to 100° C. for from 2 h to 96 h, followed by removal of the PG1 protecting groups. Preferred phosphate salts are those in which Z+ is tetraalkylammonium. Phosphate protecting groups include, but are not limited to, tert-butyl (tBu), which may be removed under acidic conditions, such as by treatment with trifluoroacetic acid in DCM or HCl in ethyl ether, and benzyl (Bn), which may be removed by hydrogenolysis.
- The following Examples illustrate preferred methods of synthesis for several compounds of Formula (I) and Formula (II).
-
- To a suspension of 1 (6.0 g, 16.1 mmol) in anhydrous THF (150 mL) was added NaHMDS (20.9 mL, 20.9 mmol, 1.0 M solution in THF), and the reaction mixture was stirred at rt for 45 min under a nitrogen atmosphere. Chloromethyl chloroformate (1.84 mL, 20.9 mmol) was added and stirring was continued for an additional 45 min. The reaction mixture was quenched with saturated aqueous NH4Cl, and extracted three times with ethyl acetate. The combined organic extracts were dried with Na2SO4 and concentrated in vacuo. Purification by MPLC (SiO2, 1-10% gradient elution, MeOH:CH2Cl2) gave 4.29 g (58%) of the title compound as an off white solid. 1H NMR (400 MHz, DMSO-d6): δ 7.54 (s, 1H), 7.43 (dd, 1H), 7.14 (dd, 1H), 6.87 (dd, 1H), 6.03-5.98 (m, 2H), 4.81-4.74 (m, 1H), 4.48-4.46 (m, 4H), 4.15 (dd, 1H), 4.11 (dd, 1H), 3.91 (dd, 1H), 3.85 (s, 3H), 3.78 (dd, 1H), and 2.49 (s, 3H). MS 466 (M+1)+
- To a suspension of 1 (500 mg, 1.34 mmol) in anhydrous THF (8 mL) was added NaHMDS (1.75 mL, 1.75 mmol, 1.0 M solution in THF), and the reaction mixture was stirred at rt for 1 h under a nitrogen atmosphere. Chloroethyl chloroformate (0.18 mL, 1.74 mmol) was added and stirring was continued for an additional 3 h. The reaction mixture was quenched with saturated aqueous NH4Cl, and extracted three times with ethyl acetate. The combined organic extracts were washed with saturated aqueous NH4Cl, dried with Na2SO4, and concentrated in vacuo. Purification by MPLC (silica, 1-10% gradient elution, MeOH:CH2Cl2) gave 338 mg (52%) of the title compound as a mixture of diastereomers. 1H NMR (400 MHz, DMSO-d6); δ 7.53 (s, 1H), 7.41 (dd, 1H), 7.17-7.13 (m, 1H), 6.90-6.85 (m, 1H), 6.66-6.60 (m, 1H), 4.82-4.72 (m, 1H), 4.48-4.46 (m, 4H), 4.19-4.07 (m, 2H), 3.96-3.86 (m, 1H), 3.84 (s, 3H), 3.80-3.75 (m, 1H), 2.48 (s, 3H), and 1.84-1.82 (m, 3H). MS 480 (M+1)+
- To a solution of amino acid (23.7 mmol) in MeOH (20 mL) and water (10 mL) was added cesium carbonate (11.8 mmol) in small portions. The resulting solution was stirred at rt for 5 min, concentrated in vacuo to remove MeOH, frozen, and then lyophilized to give a white powder. Toluene was added to this powder, and the suspension was concentrated in vacuo, and the resulting white powder was dried in a vacuum oven at 50° C. overnight to give a quantitative yield of cesium salt as a white powder.
-
- To a solution of 2a (1.41 g, 3.04 mmol) in DMF was added the cesium salt of 4-carboxymethyl-piperazine-1-carboxylic acid tert-butyl ester (1.71 g, 4.56 mol, prepared from 4-carboxymethyl-piperazine-1-carboxylic acid tert-butyl ester following general procedure A) and the resulting suspension was stirred at rt for 20 h and at 40° C. for 2 h. The reaction mixture was then filtered and purified directly by HPLC (C-18 column, 30-90% gradient elution, MeCN:H2O), and fractions containing product were lyophilized to give 0.670 g, (33%) of the title compound as a fluffy white solid. 1H NMR (400 MHz, DMSO-d6): δ 7.53 (s, 1H), 7.42 (dd, 1H), 7.15 (dd, 1H), 6.87 (dd, 1H), 5.83 (s, 2H), 4.78-4.70 (m, 1H), 4.48-4.46 (m, 4H), 4.12-4.06 (m, 2H), 3.89 (dd, 1H), 3.84 (s, 3H), 3.76 (dd, 1H), 3.38 (s, 2H), 3.30-3.28 (m, 4H), 2.47-2.45 (m, 4H), 2.45 (s, 3H), and 1.38 (s, 9H). MS 674 (M+1)+
- To a solution of 3a (1.25 g, 1.85 mmol) in dichloromethane (18 mL) was added dropwise a solution of 1N HCl in diethyl ether (18.5 mL, 18.5 mmol), and the reaction mixture was stirred under nitrogen at rt for 2 h. The reaction mixture was concentrated in vacuo and purified directly by HPLC (C-18 column, 5-55% gradient elution, MeCN:H2O), to give 0.530 g (53%) of the title compound. 1H NMR (400 MHz, DMSO-d6): δ 8.77 (br s, 1H) 7.54 (s, 1H), 7.42 (dd, 1H), 7.15 (dd, 1H), 6.87 (dd, 1H), 5.86-5.83 (m, 2H), 4.78-4.72 (m, 1H), 4.48-4.46 (m, 4H), 4.13-4.06 (m, 2H), 3.90 (dd, 1H), 3.85 (s, 3H), 3.77 (dd, 1H), 3.49 (s, 2H), 3.07-3.04 (m, 4H), 2.78-2.76 (m, 4H), and 2.46 (s, 3H). MS 574 (M+1)+
- To a solution of 2b (600 mg, 1.26 mmol) in DMF (10 mL) was added the cesium salt of 4-carboxymethyl-piperazine-1-carboxylic acid tert-butyl ester (0.950 g, 2.54 mmol, prepared from 4-carboxymethyl-piperazine-1-carboxylic acid tert-butyl ester following general procedure A) and the resulting suspension was stirred at rt overnight under an atmosphere of nitrogen. The reaction mixture was then filtered and purified directly by HPLC (C-18 column, 30-90% gradient elution, MeCN:H2O), and fractions containing product were lyophilized to give 95 mg (11%) of the title compound as a mixture of diastereomers. 1H NMR (400 MHz, DMSO-d6): δ 7.53 (s, 1H), 7.44-7.39 (m, 1H), 7.17-7.14 (m, 1H), 6.90-6.78 (m, 2H), 4.78-4.70 (m, 1H), 4.48-4.46 (m, 4H), 4.14-4.02 (m, 2H), 3.93-3.87 (m, 1H), 3.84 (s, 3H), 3.78-3.74 (m, 1H), 3.32 (s, 2H), 3.32-3.25 (m, 4H), 2.47-2.42 (m, 7H), 1.52-1.51 (m, 3H), and 1.38-1.37 (m, 9H). MS 688 (M+1)+
- To a solution of 3b (170 mg, 0.25 mmol) in dichloromethane (18 mL) was added dropwise a solution of 1N HCl in diethyl ether (18.5 mL, 18.5 mmol), and the reaction mixture was stirred under nitrogen at rt for 2 h. The reaction mixture was concentrated in vacuo and purified directly by HPLC (C-18 column, 10-55% gradient elution, MeCN:H2O), to give 70 mg (48%) of the title compound. 1H NMR (400 MHz, DMSO-d6): δ 8.60 (br s, 1H) 7.54 (s, 1H), 7.45-7.40 (m, 1H), 7.17-7.14 (m, 1H), 6.90-6.79 (m, 2H), 4.77-4.71 (m, 1H), 4.48-4.46 (m, 4H), 4.14-4.03 (m, 2H), 3.94-3.89 (m, 1H), 3.85 (s, 3H), 3.79-3.75 (m, 1H), 3.46-3.42 (m, 2H), 3.09-3.05 (m, 4H), 2.78-2.73 (m, 4H), 2.45-2.44 (m, 3H), and 1.53-1.51 (m, 3H). MS 588 (M+1)+
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- To a solution of 2a (379 g, 0.81 mmol) in DMF (1.6 mL) was added the cesium salt of N,N-dimethyl glycine (192 mg, 0.81 mmol, prepared from N,N-dimethyl glycine following general procedure A) and the resulting suspension was stirred at rt for 24 h. The reaction mixture was filtered, purified directly by HPLC (C-18 column, 30-100% gradient elution, MeCN:H2O), and fractions containing product were lyophilized to give 99 mg (23%) of the title compound as a white powder. 1H NMR (400 MHz, DMSO-d6): δ 7.53 (s, 1H), 7.43 (dd, 1H), 7.16 (dd, 1H), 6.87 (dd, 1H), 5.70-5.65 (m, 2H), 4.85-4.78 (m, 1H), 4.48-4.46 (m, 4H), 4.22 (dd, 1H), 4.13 (dd, 1H), 4.00 (dd, 1H), 3.85 (s, 3H), 3.79 (dd, 1H), 3.72 (s, 2H), 3.20 (s, 3H), 3.19 (s, 3H), and 2.50 (s, 3H). MS 533 (M+1)+
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- To a solution of 2a (330 mg, 0.71 mmol) in DMF (3.0) mL) was added the cesium salt of morpholine-N-acetic acid (235 mg, 0.85 mmol, prepared from morpholine-N-acetic acid following general procedure A) and the resulting suspension was stirred at rt overnight and at 40° C. for an additional 6 h. The reaction mixture was then filtered and purified directly by HPLC (C-18 column, 30-90% gradient elution, MeCN:H2O), and fractions containing product were lyophilized to give 45 mg, (11%) of the title compound as a white powder. 1H NMR (400 MHz, DMSO-d6): δ 7.53 (s, 1H), 7.42 (dd, 1H), 7.15 (dd, 1H), 6.87 (dd, 1H), 5.84 (s, 2H), 4.78-4.71 (m, 1H), 4.48-4.46 (m, 4H), 4.13-4.07 (m, 2H), 3.89 (dd, 1H), 3.85 (s, 3H), 3.76 (dd, 1H), 3.56-3.54 (m, 4H), 3.34 (s, 2H), and 2.45 (s, 3H). MS 575 (M+1)+
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- To a solution of 2a (300 mg, 0.65 mmol) in DMF (2.5) mL was added the cesium salt of N-methyl-L-proline (335 mg, 1.29 mmol, prepared from N-methyl-L-proline following general procedure A) and the resulting suspension was stirred overnight at rt. The reaction mixture was filtered, purified directly by HPLC (C-18 column, 30-50% gradient elution, MeCN:H2O), and fractions containing product were lyophilized to give 90 mg (25%) of the title compound as mixture of diastereomers (dr 1:1.80). 1H NMR (400 MHz, DMSO-d6): δ 7.53 (s, 1H), 7.46-7.40 (m, 1H), 7.17-7.14 (m, 1H), 6.90-6.85 (m, 1H), 6.11-6.04 (m, 1H), 5.42-5.29 (m, 1H), 4.87-4.79 (m, 1H), 4.48-4.46 (m, 4H), 4.27-3.90 (m, 4H), 3.84 (s, 3H), 3.78 (dd, 1H), 3.72-3.35 (m, 2H), 3.23 and 3.08 (two s, 3H), and 2.33-1.91 (m, 4H). MS 559 (M+1)+
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- To a solution of 2a (300 mg, 0.65 mmol) in DMF (3.0 mL) was added the cesium salt of (4-methyl-piperazin-1-yl)-acetic acid (379 mg, 1.30 mol, prepared from (4-methyl-piperazin-1-yl)-acetic acid following general procedure A) and the resulting suspension was stirred at rt for 6 h. The reaction mixture was filtered, purified directly by HPLC (C-18 column, 30-80% gradient elution, MeCN:H2O), and fractions containing product were lyophilized to give 80 mg, (21%) of the title compound as a white powder. 1H NMR (400 MHz, DMSO-d6): δ 7.53 (s, 1H), 7.42 (dd, 1H), 7.15 (dd, 1H), 6.87 (dd, 1H), 5.83 (s, 2H), 4.78-4.71 (m, 1H), 4.48-4.46 (m, 4H), 4.13-4.07 (m, 2H), 3.89 (dd, 1H), 3.86 (s, 3H), 3.76 (dd, 1H), 3.32 (s, 2H), 2.45 (s, 3H), 2.32-2.24 (m, 4H), and 2.12 (s, 3H). MS 588 (M+1)+
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- To a solution of 2a (200 mg, 0.43 mmol) in DMF (2 mL) was added the cesium salt of N-Boc sarcosine (276 mg, 0.86 mmol, prepared from N-Boc sarcosine following general procedure A) and the reaction mixture was stirred overnight at rt. The reaction mixture was filtered, purified directly by HPLC (C-18 column, 30-100% gradient elution, MeCN:H2O), and fractions containing product were lyophilized to give 82 mg (31%) of the title compound as a fluffy white solid. 1H NMR (400 MHz, DMSO-d6): observed as a mixture of rotomers. δ 7.53 (s, 1H), 7.42 (dd, 1H), 7.15 (dd, 1H), 6.87 (dd, 1H), 5.88-5.86 (m, 2H), 4.79-4.71 (m, 1H), 4.48-4.46 (m, 4H), 4.15-4.08 (m, 2H), 4.06 (br s, 2H), 3.92-3.86 (m, 1H), 3.85 (s, 3H), 3.78 (dd, 1H), 2.86 and 2.82 (two s, 3H), 2.46 (s, 3H), 1.38 and 1.32 (two s, 9H). MS 619 (M+1)+
- To a solution of 9 (50 mg, 0.08 mmol) in CH2Cl2 (2 mL) under nitrogen was added 1N HCl in Et2O (2.0 mL, 2.0 mmol). The reaction mixture was stirred at rt for 2 h, concentrated in vacuo, and purified directly by HPLC (C-18 column, 30-80% gradient elution, MeCN:H2O with 0.1% TFA). Fractions containing product were lyophilized to give 15 mg (36%) of the title compound as the trifluoroacetate salt. 1H NMR (400 MHz, DMSO-d6): δ 9.07 (br s, 1H), 7.54 (s, 1H), 7.43 (dd, 1H), 7.16 (dd, 1H), 6.87 (dd, 1H), 5.96-5.92 (m, 2H), 4.80-4.74 (m, 1H), 4.48-4.46 (m, 4H), 4.15-4.09 (m, 4H), 3.91 (dd, 1H), 3.85 (s, 3H), 3.76 (dd, 1H), 2.62 (s, 3H), 2.47 (s, 3H). MS 519 (M+1)+
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- To a solution of 2a (300 mg, 0.65 mmol) in DMF (2.5 mL) was added the cesium salt of N-Boc-L-proline (291 mg, 0.84 mmol, prepared from N-Boc-L-proline following general procedure A) and the reaction mixture was stirred overnight at rt. The reaction mixture was filtered, purified directly by HPLC (C-18 column, 30-90% gradient elution, MeCN:H2O), and fractions containing product were lyophilized to give 243 mg (59%) of the title compound as a fluffy white solid. 1H NMR (400 MHz, CDCl3): δ 7.39-7.34 (m, 1H), 7.14 (s, 1H), 7.11-7.06 (m, 1H), 6.71-6.66 (m, 1H), 5.91 (s, 2H), 4.85-4.76 (m, 1H), 4.57-4.56 (m, 4H), 4.33-4.17 (m, 2H), 4.09-3.98 (m, 2H), 3.93 (s, 3H), 3.70-3.64 (m, 1H), 3.58-3.37 (m, 2H), 2.56 (s, 3H), 2.33-2.20 (m, 1H), 2.05-1.86 (m, 3H), 1.42 and 1.40 (two s, 9H). MS 645 (M+1)+
- To a solution of 11 (1 equiv) in dichloromethane at rt under nitrogen is added TFA (5 equiv) dropwise. The reaction mixture is stirred at rt for 2 h, concentrated in vacuo, purified directly by HPLC (C-18 column, 0-100% gradient elution, MeCN:H2O with 0.1% TFA), and fractions containing product are lyophilized to give the title compound. Theoretical MS 545 (M+1)+
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- To a solution of 4-[[[bis(phenylmethoxy)phosphinyl]oxy]methyl]-benzoic acid (69 mg, 0.17 mmol, prepared according to the procedure described in Zhu, Z.; Chen, H.; Goel, O. P.; Chan, O. H.; Stilgenbauer, L. A.; Stewart, B. H. Bioorg Med. Chem. Lett. 2000, 10, 1121) in DMF (0.6 mL) was added cesium carbonate (22 mg, 0.06 mmol) and the reaction mixture was stirred at rt for 1 h. To this mixture was added 2a and stirring was continued overnight. The crude reaction mixture was filtered, purified directly by HPLC (C-18 column, 30-100% gradient elution, MeCN:H2O), and fractions containing product were lyophilized to give 38 mg (35%) of the title compound. 1H NMR (400 MHz, DMSO-d6): δ 8.00 (d, 2H), 7.52 (s, 1H), 7.50 (d, 2H), 7.38-7.33 (m, 11H), 7.12 (dd, 1H), 6.83 (dd, 1H), 6.09-6.06 (m, 2H), 5.13 (d, 2H), 5.05 (d, 4H), 4.80-4.73 (m, 1H), 4.47-4.45 (m, 4H), 4.15-4.06 (m, 2H), 3.92 (dd, 1H), 3.84 (s, 3H), 3.78 (dd, 1H), 2.47 (s, 3H). MS 842 (M+1)+
- A suspension of 13 (1 equiv) and 10% Pd/C (1 weight equiv of 13) in methanol is hydrogenated in a Parr shaker at 30 psi for 6 h. The reaction mixture is filtered, concentrated in vacuo, purified directly by HPLC (C-18 column, 0-100% gradient elution, MeCN:H2O), and fractions containing product are lyophilized to give the title compound. Theoretical MS 662 (M+1)+
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- To a solution of 2a (232 mg, 0.50 mmol) in DMF (1.5 mL) was added the cesium salt of 4-(bis-benzyloxy-phosphoryloxy)-benzoic acid (397 mg, 0.75 mmol; 4-(bis-benzyloxy-phosphoryloxy)-benzoic acid was prepared following the procedure described in WO 2001027106. The cesium salt of 4-(bis-benzyloxy-phosphoryloxy)-benzoic acid was prepared using general procedure A). The reaction mixture was stirred overnight at rt, filtered, and purified directly by HPLC (C-18 column, 30-100% gradient elution, MeCN:H2O). Fractions containing product were lyophilized to give 85 mg (21%) of the title compound as a fluffy white solid. 1H NMR (400 MHz, DMSO-d6): δ 8.03 (d, 2H), 7.52 (s, 1H), 7.42-7.33 (m, 13H), 7.11 (dd, 1H), 6.83 (dd, 1H), 6.07-6.04 (m, 2H), 5.18 (d, 4H), 4.80-4.73 (m, 1H), 4.47-4.45 (m, 4H), 4.15-4.07 (m, 2H), 3.92 (dd, 1H), 3.84 (s, 3H), 3.76 (dd, 1H), 2.47 (s, 3H). MS 828 (M+1)+
- A suspension of 15 (1 equiv) and 10% Pd/C (1 weight equiv of 15) in 1,4-cyclohexadiene and THF is stirred at rt for 6 h. The reaction mixture is filtered, concentrated in vacuo, purified directly by HPLC (C-18 column, 0-100% gradient elution, MeCN:H2O), and fractions containing product are lyophilized to give the title compound. Theoretical MS 646 (M+1)+
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- To a solution of 2a (1.545 g, 3.33 mmol) in THF (25 mL) was added sodium iodide (549 mg, 3.66 mmol) and the tetrabutylammonium salt of di-tert-butylphosphate (1.545 g, 3.42 mmol). The reaction mixture was heated at 65° C. for 24 h, concentrated in vacuo, dissolved in DMSO, filtered, and purified directly by HPLC (C-18 column, 30-100% gradient elution, MeCN:H2O). Fractions containing product were lyophilized to give 1.07 g (50%) of the title compound. 1H NMR (400 MHz, DMSO-d6): δ 7.53 (s, 1H), 7.42 (dd, 1H), 7.16 (dd, 1H), 6.87 (dd, 1H), 5.68 (dd, 1H), 5.60 (dd, 1H), 4.85-4.78 (m, 1H), 4.48-4.46 (m, 4H), 4.19-4.08 (m, 2H), 3.90 (dd, 1H), 3.84 (s, 3H), 3.79 (dd, 1H), 2.49 (s, 3H), 1.42 (s, 18H). MS 1301 (2M+23)+
- To a solution of 2b (75 mg, 0.16 mmol) in THF (1.5 mL) was added sodium iodide (66 mg, 0.44 mmol) and the tetrabutylammonium salt of di-tert-butylphosphate (200 mg, 0.04 mmol). The reaction mixture was heated at 65° C. for 48 h, concentrated in vacuo, dissolved in DMSO, filtered, and purified directly by HPLC (C-18 column, 30-100% gradient elution, MeCN:H2O). Fractions containing product were lyophilized to give 20 mg (20%) of the title compound as a 1:1 mixture of diastereomers. 1H NMR (400 MHz, DMSO-d6): δ 7.53 (s, 1H), 7.44-7.39 (m, 1H), 7.17-7.14 (m, 1H), 6.90-6.85 (m, 1H), 6.45-6.38 (m, 1H), 4.85-4.75 (m, 1H), 4.48-4.46 (m, 4H), 4.25-4.08 (m, 2H), 3.95-3.77 (m, 2H), 3.85 (s, 3H), 2.47-2.48 (m, 3H), 1.56-1.54 (m, 3H), 1.41-1.40 (m, 18H). MS 654 (M+1)+
- To a solution of 17a (500 mg, 0.78 mmol) in dichloromethane (2.5 mL) under an atmosphere of nitrogen was added a solution of 1N HCl in diethyl ether (2.34 mL, 2.34 mmol) and the reaction mixture was stirred at rt for 3 h. The reaction mixture was concentrated in vacuo, purified directly by HPLC (C-18 column, 10-100% gradient elution, MeCN:H2O), and fractions containing product were lyophilized to give 290 mg (70%) of the title compound. 1H NMR (400 MHz, DMSO-d6): δ 7.53 (s, 1H), 7.42 (dd, 1H), 7.16 (dd, 1H), 6.87 (dd, 1H), 5.65 (dd, 1H), 5.58 (dd, 1H), 4.87-4.80 (m, 1H), 4.48-4.46 (m, 4H), 4.20 (dd, 1H), 4.09 (dd, 1H), 3.87 (dd, 1H), 3.84 (s, 3H), 3.78 (dd, 1H), and 2.49 (s, 3H). MS 528 (M+1)+
- To a solution of 17b (1 equiv) in dichloromethane is added TFA (3 equiv) and the reaction mixture is stirred at rt for 3 h. The reaction mixture is concentrated in vacuo, and purified directly by HPLC (C-18 column, 10-100% gradient elution, MeCN:H2O) to give the title compound. Theoretical MS 542 (M+1)+
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- The first step in this reaction sequence was carried out according to a procedure described in Gray, M. D. M.; Smith, D. J. H. Tetrahedron. Lett. 1980, 21, 859. A solution of phosphoric acid dibenzyl ester ethyl ester (5.22 g, 17.05 mmol) in tert-butylamine (10 mL) was heated at 92° C. (oil bath temperature) in a sealed tube for 8 h. Upon cooling to rt a white waxy solid formed. To this solid was added tetrabutylammonium hydroxide (11.37 mL, 17.05 mmol) and the resulting homogenous solution was extracted three times with diethyl ether. The aqueous layer was concentrated in vacuo and dried under a vacuum overnight to give 7.53 g (96%) of a pale brown oil, which was used in the next step without further purification. 1H NMR (400 MHz, DMSO-d6): δ 7.33-7.20 (m, 5H), 4.63 (d, 2H), 3.65-3.58 (m, 2H), 3.19-3.15 (m, 8H), 1.60-1.53 (m, 8H), 1.35-1.26 (m, 8H), 1.05 (t, 3H), and 0.93 (t, 12H).
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- To a solution 2a (3.96 g, 8.52 mmol) in DMF (12 mL) was added phosphate derivative 19 (7.53 g, 17.05 mmol). The reaction mixture was stirred at rt for 48 h, filtered, and purified directly by HPLC (C-18 column, 50-80% gradient elution, MeCN:H2O) to give 1.20 g (22%) of the title compound as a fluffy white powder. 1H NMR (400 MHz, DMSO-d6): δ 7.54 (s, 1H), 7.44-7.34 (m, 6H), 7.16-7.13 (m, 1H), 6.89-6.84 (m, 1H), 5.77-5.66 (m, 2H), 5.08 (d, 2H), 4.81-4.73 (m, 1H), 4.48-4.46 (m, 4H), 4.14-4.04 (m, 4H), 3.87-3.82 (m, 4H), 3.77-3.73 (m, 1H), 2.44 and 2.43 (two s, 3H), 1.22 (dt, 3H). MS 646 (M+1)+
- To a solution 2b (1 equiv.) in DMF is added phosphate derivative 19 (2 equiv.). The reaction mixture is stirred at rt for 48 h, filtered, and purified directly by HPLC (C-18 column, 50-80% gradient elution, MeCN:H2O) to give the title compound. Theoretical MS 660 (M+1)+
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- A solution of 20a (1.20 g, 1.86 mmol) in methanol (40 mL) was passed through an “H-cube” hydrogenator equipped with a 10% Pd on carbon cartridge under 30 bar of hydrogen at a flow rate of 1 mL/min. The reaction mixture was concentrated in vacuo and purified directly by HPLC (C-18 column, 5-55% gradient elution, MeCN:H2O). Fractions containing product were lyophilized to give 555 mg (54%) of the title compound as a fluffy white solid. 1H NMR (400 MHz, DMSO-d6): δ 7.54 (s, 1H), 7.43 (dd, 1H), 7.17 (dd, 1H), 6.87 (dd, 1H), 5.70-5.57 (m, 2H), 4.86-4.79 (m, 1H), 4.48-4.46 (m, 4H), 4.18 (dd, 1H), 4.10 (t, 1H), 3.99-3.91 (m, 2H), 3.88 (dd, 1H), 3.85 (s, 3H), 3.79 (dd, 1H), 2.49 (s, 3H), 1.20 (t, 3H). MS 556 (M+1)+
- A solution of 20b (1 equiv.) in methanol is passed through an “H-cube” hydrogenator equipped with a 10% Pd on carbon cartridge under 30 bar of hydrogen at a flow rate of 1 mL/min. The reaction mixture is concentrated in vacuo and purified directly by HPLC (C-18 column, 5-55% gradient elution, MeCN:H2O) to give the title compound. Theoretical MS 570 (M+1)+
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- Step 1: To a solution of benzyl glycolate (2.0 mL, 14.1 mmol) and triethylamine (2.35 mL, 16.9 mmol) in dichloromethane (30 mL) at 0° C. was added dropwise methanesulfonyl chloride (1.20 mL, 15.1 mL). The reaction was stirred overnight, diluted with dichloromethane, washed with saturated aqueous NH4Cl, and then with saturated NaHCO3, dried with Na2SO4, and concentrated in vacuo to give 2.50 g (73%) of methanesulfonyloxy-acetic acid benzyl ester which was used in the next step without further purification.
- Step 2:To a solution of methanesulfonyloxy-acetic acid benzyl ester (2.50 g, 10.24 mmol) in THF (20 mL) was added the tetrabutylammonium salt of di-tert-butylphosphate (4.61 g, 10.24 mmol). The reaction was stirred overnight, concentrated, and purified directly by MPLC (SiO2, 10-30% gradient elution, Hexane: EtOAc) to give 1.42 g (39%) of (di-tert-butoxy-phosphoryloxy)-acetic acid benzyl ester. 1H NMR (400 MHz, CDCl3): δ 7.37-7.35 (m, 5H), 5.21 (s, 2H), 4.55 (d, 2H), and 1.48 (s, 18H).
- Step 3: (Di-tert-butoxy-phosphoryloxy)-acetic acid benzyl ester (700 mg, 1.96 mmol) was dissolved in MeOH (40 mL) and passed through a “H-cube” hydrogenator with a 10% Pd on carbon cartridge under 40 psi of hydrogen at a flow rate of 1 mL/min. The reaction mixture was concentrated in vacuo to give 513 mg (98%) of (di-tert-butoxy-phosphoryloxy)-acetic acid, which was used in the next step without further purification. 1H NMR (400 MHz, CDCl3): δ 4.53 (d, 2H), and 1.51 (s, 18H).
- Step 4: To a solution of (di-tert-butoxy-phosphoryloxy)-acetic acid (480 mg, 1.79 mmol) in MeOH (4 mL) and water (2 mL) was added cesium carbonate (261 mg, 0.80 mmol) and the reaction was stirred at rt for 10 min. The resulting homogenous solution was concentrated in vacuo to give the title compound as a gummy solid.
- To a solution of 2a (579 mg, 1.24 mmol) in DMF (2.5 mL) was added 22 (1.49 g, 3.73 mmol) and the reaction mixture was stirred overnight at rt. The reaction mixture was filtered, purified directly by HPLC (C-18 column, 30-100% gradient elution, MeCN:H2O), and fractions containing product were lyophilized to give 438 mg (51%) of the title compound as a fluffy white solid. 1H NMR (400 MHz, DMSO-d6): δ 7.53 (s, 1H), 7.42 (dd, 1H), 7.14 (dd, 1H), 6.87 (dd, 1H), 5.89 (s, 2H), 4.80-4.72 (m, 1H), 4.60 (d, 2H), 4.48-4.46 (m, 4H), 4.14-4.08 (m, 2H), 3.89 (dd, 1H), 3.85 (s, 3H), 3.76 (dd, 1H), 2.46 (s, 3H), and 1.41 (s, 18H). MS 698 (M+1)+
- To a solution of 23 (20 mg, 0.03 mmol) in dichloromethane (1 mL) under nitrogen was added dropwise a solution of 1N HCl in diethyl ether (2.0 mL, 2.0 mmol). The reaction mixture was stirred for 1 h at rt, concentrated in vacuo, and purified directly by HPLC (C-18 column, 10-70% gradient elution, MeCN:H2O with 0.1% TFA) to give 5 mg (25%) of the title compound. 1H NMR (400 MHz, DMSO-d6): δ 7.53 (s, 1H), 7.42 (dd, 1H), 7.15 (dd, 1H), 6.87 (dd, 1H), 5.88 (s, 2H), 4.79-4.72 (m, 1H), 4.53 (d, 2H), 4.48-4.46 (m, 4H), 4.15-4.07 (m, 2H), 3.88 (dd, 1H), 3.85 (s, 3H), 3.76 (dd, 1H), and 2.46 (s, 3H). MS 586 (M+1)+
- One mg of each compound was diluted with at least 100 μl of the designated buffer, vortexed vigorously for approximately 1 minute, and visually inspected. Sodium citrate (40 mM) was buffered to pH 4 and phosphate-buffered saline was buffered to pH 7. Solutions with no remaining particles were recorded with a solubility ≧to the starting concentration. Compound suspensions were further diluted in 0.1 mL increments followed by vortexing as above, until the prodrug was dissolved. The solubility of the prodrugs in the buffers tested is listed in Table 1. Solubilities of prodrugs ranged from 1.0 mg/ml to >10 mg/ml. The term “ND” means not determined.
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TABLE 1 Solubility Compound Sodium Citrate Saline 4a ≧10 mg/mL ≧10/mg/mL 4b ≧7.5 mg/mL ND 5 ≧10 mg/mL ≧10 mg/mL 6 2.5 mg/mL 1.0 mg/mL 8 ≧10 mg/mL ≧10/mg/mL 10 ≧10 mg/mL ≧10 mg/mL 18a ≧2 mg/mL ≧2 mg/mL 21a ≧10 mg/mL ≧10/mg/mL 24 ≧5 mg/mL ND - The solubility of the active drug, Compound 1, was determined in a separate experiment in which an excess of the compound was added to pH 4 buffer. The mixture was shaken with a Burrell wrist action shaker at ambient temperature for 24 hours. Excess solute was removed by centrifugation, the supernatant was diluted with a suitable solvent, and the concentration of the compound was measured using HPLC. The solubility of Compound 1 at pH 4 was 0.007 mg/mL.
- Female Swiss Webster mice weighing between 20-25 g were infected intraperitoneally with approximately 5×105 colony forming units (CFU) S. aureus Smith in 7% mucin. One hour later, the animals were given prodrug or Compound 1 intravenously or orally in a dose volume of 0.1 mL/10 g body weight. Each group consisted of eight animals. The prodrugs were prepared immediately before dosing in 40 mM sodium citrate buffer, pH 4. Compound 1 was prepared in 20% HPβCD and warmed until dissolved (IV dosing) or in 0.5% methocel (PO dosing) as a suspension. The mice were observed over a three day period and ED50 values were calculated from the resulting % survival curves (Table 2). The term “ND” means not determined. The prodrug ED50 values were normalized to the content of Compound 1.
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TABLE 2 ED50 in mg/kg (95% Fiducial Limits) Compound IV PO a1 3.3 (2.3-5.0) 3.5 (2.7-4.5) a4a 3.6 (2.5-5.1) 4.9 (3.2-8.1) 4b 4.2 (1.2-7.9) ND 5 4.8 (2.5-8.3) ND 8 5.3 (3.2-9.2) ND a21a 2.9 (1.9-4.2) 4.4 (2.6-8.0) aThe ED50 was calculated from the results of two or more experiments conducted on separate days. - Animals were weighed and given the prodrug intravenously (mice, rats, or dogs) or orally (mice). The prodrugs were prepared immediately before dosing in 40 mM sodium citrate buffer, pH 4. Compound 1 was prepared in 20% HPβCD and warmed until dissolved (IV dosing), or in 0.5% methocel as a suspension (PO dosing). At 0, 0.08, 0.25, 0.5, 1, 2, 4, 6, 8, and 24 hours, blood was removed (via cardiac puncture in euthanized mice, via orbital sinus puncture in anesthetized rats, or via cephalic vein in conscious dogs) and 200 □L of the plasma supernatant was immediately frozen (−70° C.).
- On the day of analysis, the samples were thawed on ice and 100 μL was diluted with 200 μL of acetonitrile. The samples were vortexed and then centrifuged at 3000 x g for 5 minutes to pellet the precipitated plasma proteins. The supernatant was analyzed by HPLC, or by LC-MS-MS. A standard curve was constructed by spiking a known quantity of Compound 1 into plasma and then performing serial dilutions in the range of 0.01 to 10 μg/mL. Pharmacokinetic (PK) parameters were calculated by WinNonlin Pro, version 3.1.
- The results indicate that, when normalized to the dose, PK parameters for Compounds 4a and 21a were similar to the respective parameters for Compound 1 in all species tested (Table 3a-3d). This indicates that the prodrug form for Compounds 4a and 21a were rapidly converted in vivo to Compound 1, which then exhibited elimination kinetics typically observed for Compound 1. The term “ND” means not determined. The term “NA” means not applicable. The dose of each prodrug was normalized to the Compound 1 dose. The values of the PK parameters for the prodrug form for Compounds 4a and 21a are based on the resulting accumulation and elimination of Compound 1.
-
TABLE 3a Mouse IV PK Parameters Cpd 1 Cpd 4a Cpd 21a Cmax (ug/ml) 2.6 ND 11 AUC (ug-h/ml) 1.1 ND 28 T1/2 (h) 1 ND 1.4 Tmax(h) 0.13 ND 1 MRT (h) ND 2.5 Dose (mg/kg) 2 ND 26 Normalized Dose (mg/kg) NA ND 17.5 -
TABLE 3b Mouse PO PK Parameters Cpd 1 Cpd 4a Cpd 21a Cmax (ug/ml) 5.9 8.3 14.3 AUC (ug-h/ml) 23 35 44 T1/2 (h) 2.1 1.8 1.9 Tmax (h) 1.3 2 0.5 MRT (h) 3.4 3.1 Dose (mg/kg) 10 22 22 Normalized Dose (mg/kg) NA 15 15 -
TABLE 3c Rat IV PK Parameters Cpd 1 Cpd 4a Cpd 21a Cmax (ug/ml) 6.6 2.1 2.3 AUC (ug-h/ml) 14 7.8 9.2 T1/2 (h) 4.5 4.3 4.1 Tmax (h) NA 0.4 0.27 MRT (h) 4.8 4.5 Dose (mg/kg) 2 2 2 Normalized Dose (mg/kg) NA 1.3 1.3 -
TABLE 3d Dog IV PK Parameters Cpd 1 Cpd 4a Cpd 21a Cmax (ug/ml) 2.3 1.1 0.9 AUC (ug-h/ml) 2.8 2.4 4.2 T1/2 (h) 1.8 3.1 3.3 Tmax (h) NA 1.0 0.58 MRT (h) 4.2 4.9 Dose (mg/kg) 1 2 2 Normalized Dose (mg/kg) NA 1.3 1.3 - The above description is intended for illustrative purposes only, and does not limit the scope of the invention, which is defined in the following claims.
Claims (10)
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