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Definitions

• the present invention relates to compounds that modulate the activity of Janus kinases and are useful in the treatment of diseases related to activity of Janus kinases including, for example, immune-related diseases, skin disorders, myeloid proliferative disorders, cancer, and other diseases.
• Cytokines are low-molecular weight polypeptides or glycoproteins that stimulate biological responses in virtually all cell types. For example, cytokines regulate many of the pathways involved in the host inflammatory response to sepsis. Cytokines influence cell differentiation, proliferation and activation, and they can modulate both proinflammatory and anti-inflammatory responses to allow the host to react appropriately to pathogens.
• cytokine binding initiates intracellular signaling cascades that transduce the extracellular signal to the nucleus, ultimately leading to changes in gene expression.
• the pathway involving the Janus kinase family of protein tyrosine kinases (JAKs) and Signal Transducers and Activators of Transcription (STATs) is engaged in the signaling of a wide range of cytokines.
• JAKs fulfill this function.
• Cytokines bind to their receptors, causing receptor dimerization, and this enables JAKs to phosphorylate each other as well as specific tyrosine motifs within the cytokine receptors.
• STATs that recognize these phosphotyrosine motifs are recruited to the receptor, and are then themselves activated by a JAK-dependent tyrosine phosphorylation event.
• STATs dissociate from the receptors, dimerize, and translocate to the nucleus to bind to specific DNA sites and alter transcription (Scott, M. J., C. J. Godshall, et al. (2002). “Jaks, STATs, Cytokines, and Sepsis.” Clin Diagn Lab Immunol 9(6): 1153-9).
• JAK1 also known as Janus kinase-1
• JAK2 also known as Janus kinase-2
• JAK3 also known as Janus kinase, leukocyte
• JAKL also known as Janus kinase-2
• TYK2 also known as protein-tyrosine kinase 2
• JAK proteins range in size from 120 to 140 kDa and comprise seven conserved JAK homology (JH) domains; one of these is a functional catalytic kinase domain, and another is a pseudokinase domain potentially serving a regulatory function and/or serving as a docking site for STATs (Scott, Godshall et al. 2002, supra).
• JH JAK homology
• JAK3 is reported to be preferentially expressed in natural killer (NK) cells and not resting T cells, suggesting a role in lymphoid activation (Kawamura, M., D. W. McVicar, et al. (1994). “Molecular cloning of L-JAK, a Janus family protein-tyrosine kinase expressed in natural killer cells and activated leukocytes.” Proc Natl Acad Sci USA 91(14): 6374-8).
• Jak1 ⁇ / ⁇ mice are runted at birth, fail to nurse, and die perinatally (Rodig, S. J., M. A. Meraz, et al. (1998). “Disruption of the Jak1 gene demonstrates obligatory and nonredundant roles of the Jaks in cytokine-induced biologic responses.” Cell 93(3): 373-83).
• Jak2 ⁇ / ⁇ mouse embryos are anemic and die around day 12.5 postcoitum due to the absence of definitive erythropoiesis. JAK2-deficient fibroblasts do not respond to IFNgamma, although responses to IFNalpha/beta and IL-6 are unaffected.
• JAK2 functions in signal transduction of a specific group of cytokine receptors required in definitive erythropoiesis (Neubauer, H., A. Cumano, et al. (1998). Cell 93(3): 397-409; Parganas, E., D. Wang, et al. (1998). Cell 93(3): 385-95.). JAK3 appears to play a role in normal development and function of B and T lymphocytes. Mutations of JAK3 are reported to be responsible for autosomal recessive severe combined immunodeficiency (SCID) in humans (Candotti, F., S. A. Oakes, et al. (1997). “Structural and functional basis for JAK3-deficient severe combined immunodeficiency.” Blood 90(10): 3996-4003).
• SCID autosomal recessive severe combined immunodeficiency
• the JAK/STAT pathway and in particular all four members of the JAK family, are believed to play a role in the pathogenesis of the asthmatic response, chronic obstructive pulmonary disease, bronchitis, and other related inflammatory diseases of the lower resporiatory tract.
• T helper 2 T helper 2
• Signaling through the cytokine receptor IL-4 stimulates JAK1 and JAK3 to activate STAT6, and signaling through IL-12 stimulates activation of JAK2 and TYK2, and subsequent phosphorylation of STAT4.
• STAT4 and STAT6 control multiple aspects of CD4+ T helper cell differentiation (Pernis, A. B.
• JAK/STAT pathway has also been implicated to play a role in inflammatory diseases/conditions of the eye including, but not limited to, ulceris, uveitis, scleritis, conjunctivitis, as well as chronic allergic responses. Therefore, inhibition of JAK kinases may have a beneficial role in the therapeutic treatment of these diseases.
• JAK/STAT pathway and in particular, JAK3, also plays a role in cancers of the immune system.
• human CD4+ T cells acquire a transformed phenotype, an event that correlates with acquisition of constitutive phosphorylation of JAKs and STATs.
• JAK3 and STAT-1, STAT-3, and STAT-5 activation and cell-cycle progression was demonstrated by both propidium iodide staining and bromodeoxyuridine incorporation in cells of four ATLL patients tested.
• JAK/STAT activation is associated with replication of leukemic cells and that therapeutic approaches aimed at JAK/STAT inhibition may be considered to halt neoplastic growth (Takemoto, S., J. C. Mulloy, et al. (1997). “Proliferation of adult T cell leukemia/lymphoma cells is associated with the constitutive activation of JAK/STAT proteins.” Proc Natl Acad Sci USA 94(25): 13897-902).
• Cytokines of the interleukin 6 (IL-6) family which activate the signal transducer gp130, are major survival and growth factors for human multiple myeloma (MM) cells.
• the signal transduction of gp130 is believed to involve JAK1, JAK2 and Tyk2 and the downstream effectors STAT3 and the mitogen-activated protein kinase (MAPK) pathways.
• JAK2 inhibitor tyrphostin AG490 JAK2 kinase activity and ERK2 and STAT3 phosphorylation were inhibited.
• JAK inhibition may be therapeutic for the treatment of cancer patients for reasons that extend beyond potential anti-tumor activity.
• the cachexia indication may gain further mechanistic support with realization that the satiety factor leptin signals through JAKs.
• JAK3 Janus kinase 3
• GVHD graft versus host disease
• JAK3 inhibitor WHI-P-154 prevented these effects arresting the DCs at an immature level, suggesting that immunosuppressive therapies targeting the tyrosine kinase JAK3 may also affect the function of myeloid cells (Saemann, M. D., C. Diakos, et al. (2003). “Prevention of CD40-triggered dendritic cell maturation and induction of T-cell hyporeactivity by targeting of Janus kinase 3.” Am J Transplant 3(11): 1341-9). In the mouse model system, JAK3 was also shown to be an important molecular target for treatment of autoimmune insulin-dependent (type 1) diabetes mellitus.
• Myeloprofiferative disorder includes polycythemia vera (PV), essential thrombocythemia (ET), myeloid metaplasia with myelofibrosis (MMM), chronic myelogenous leukemia (CML), chronic myelomonocytic leukemia (CMML), hypereosinophilic syndrome (HES) and systemic mast cell disease (SMCD).
• PV polycythemia vera
• ETD essential thrombocythemia
• MMM myeloid metaplasia with myelofibrosis
• CML chronic myelogenous leukemia
• CMML chronic myelomonocytic leukemia
• HES hypereosinophilic syndrome
• SMCD systemic mast cell disease
• the myeloproliferative disorder (such as PV, ET and MMM) are thought to be caused by acquired somatic mutation in hematopoietic progenitors, the genetic basis for these diseases has not been known. However, it has been reported that hematopoietic cells from a majority of patients with PV and a significant number of patients with ET and MMM possess a recurrent somatic activing mutation in the JAK2 tyrosine kinase.
• Inhibition of the Jak kinases is also envisioned to have therapeutic benefits in patients suffering from skin immune disorders such as psoriasis, and skin sensitization.
• skin immune disorders such as psoriasis, and skin sensitization.
• psoriasis vulgaris the most common form of psoriasis, it has been generally accepted that activated T lymphocytes are important for the maintenance of the disease and its associated psoriatic plaques (Gott Kunststoff, A. B., et al, Nat Rev Drug Disc., 4:19-34).
• Psoriatic plaques contain a significant immune infiltrate, including leukocytes and monocytes, as well as multiple epidermal layers with increased keratinocyte proliferation.
• JAK inhibitors of Janus kinases or related kinases are widely sought and several publications report effective classes of compounds. Examples of certain JAK inhibitors are reported in U.S. Pat. No. 6,852,727, WO 2003/011285, and U.S. Pat. App. Pub. No. 2006/0106020.
• the present invention further provides methods of modulating an activity of JAK comprising contacting JAK with a compound of Formula Ia, Ib, or Ic.
• the present invention further provides a method of treating a disease in a patient, where the disease is associated with JAK activity, by administering to the patient a therapeutically effective amount of a compound of Formula Ia, Ib, or Ic.
• the present invention further provides a compound of the invention for use in therapy.
• the present invention further provides a compound of the invention for use in the preparation of a medicament for use in therapy.
• the present invention provides, inter alia, compounds of Formula Ia, Ib, or Ic: or pharmaceutically acceptable salt or prodrug thereof, wherein:
• D 1 , D 2 , D 3 , D 4 , D 5 , D 6 and D 7 are, independently, CR 1 or N;
• E is O, S, SO, SO 2 , or NR 2a ;
• G is N or CR 2b ;
• Q 1 and Q 2 are each, independently, N or CR 2c ;
• W 1 is absent, C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, O, S, NR 3 , CO, COO, CONR 3 , SO, SO 2 , SONR 3 , SO 2 NR 3 , or NR 3 CONR 4 , wherein said C 1-6 alkyl, C 2-6 alkenyl or C 2-6 alkynyl is optionally substituted by 1, 2 or 3 substituents independently selected from halo, OH, C 1-4 alkoxy, C 1-4 haloalkoxy, amino, C 1-4 alkylamino and C 2-8 dialkylamino;
• W 2 is absent, C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, aryl, cycloalkyl, heteroaryl or heterocycloalkyl, wherein said C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, aryl, cycloalkyl, heteroaryl or heterocycloalkyl is optionally substituted by 1, 2, or 3 substituents independently selected from halo, CN, NO 2 , OH, ⁇ NH, ⁇ NOH, ⁇ NO—(C 1-4 alkyl), —NR 3 C(O)O—(C 1-4 alkyl), NR 3 C(O)—(C 1-4 alkyl), —C(O)O—(C 1-4 alkyl), C 1-4 haloalkyl, C 1-4 cyanoalkyl, pentahalosulfanyl, C 1-4 hydroxylalkyl, C 1-4 alkylthio, C 1-4 hal
• W 3 is absent, C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, O, S, NR 3 , ⁇ N—, ⁇ N—O—, ⁇ N—O—(C 1-4 alkyl)-, O—(C 1-4 alkyl), S—(C 1-4 alkyl), NR 3 —(C 1-4 alkyl), (C 1-4 alkyl)-O—(C 1-4 alkyl), (C 1-4 alkyl)-S—(C 1-4 alkyl), (C 1-4 alkyl)-NR 3 —(C 1-4 alkyl), CO, COO, C(O)—(C 1-4 alkyl), C(O)O—(C 1-4 alkyl), C(O)—(C 1-4 alkyl)-C(O), NR 3 C(O)—(C 1-4 alkyl), C(O)NR 3 —(C 1-4 alkyl), C(O)NR 3 —(C 1-4 alky
• W 4 is H, NR 3 R 4 , CN, C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, aryl, cycloalkyl, heteroaryl or heterocycloalkyl, wherein each of said C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, aryl, cycloalkyl, heteroaryl or heterocycloalkyl is optionally substituted by 1, 2, 3, 4 or 5 substituents independently selected from halo, OH, CN, C 1-4 alkoxy, ⁇ NH, ⁇ NOH, ⁇ NO—(C 1-4 alkyl), C 1-4 haloalkyl, C 1-4 haloalkoxy, pentahalosulfanyl, COOH, CONH 2 , COO—(C 1-4 alkyl), amino, C 1-4 alkylamino and C 2-8 dialkylamino;
• R 1 is, independently, H, halo, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, C 1-4 haloalkyl, aryl, cycloalkyl, heteroaryl, heterocycloalkyl, CN, NO 2 , OR a , SR a , C(O)R b , C(O)NR c R d , NR c C(O)NR c R d , C(O)OR a , OC(O)R b , OC(O)NR c R d , NR c R d , NR c C(O)R d , NR c C(O)OR a , S(O)R b , S(O)NR c R d , NR c S(O)NR c R d , pentahalosulfanyl, S(O) 2 R b , or S(O) 2
• R 2a is H, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, OH, C 1-4 alkoxy, C(O)R b , C(O)NR c R d , S(O)R b , S(O)NR c R d , S(O) 2 R b , or S(O) 2 NR c R d ;
• R 2b and R 2c are each, independently, H, halo, C 1-4 alkyl, C 2-4 alkenyl, C 2-4 alkynyl, C 1-4 haloalkyl, aryl, cycloalkyl, heteroaryl, heterocycloalkyl, CN, NO 2 , OR a , SR a , C(O)R b , C(O)NR c R d , C(O)OR a , OC(O)R b , OC(O)NR c R d , NR c C(O)NR c R d , NR c R d , NR c C(O)R d , NR c C(O)OR a , S(O)R b , S(O)NR c R d , NR c S(O)NR c R d , S(O) 2 R b , or S(O) 2 NR c R
• R 3 and R 4 together with the N atom to which they are attached form a heterocycloalkyl group optionally substituted by 1, 2 or 3 substituents selected from halo, C 1-4 alkyl, C 1-4 haloalkyl, OH, C 1-4 alkoxy, C 1-4 haloalkoxy, amino, C 1-4 alkylamino, C 2-8 dialkylamino, aminocarbonyl, C 1-4 alkylaminocarbonyl, and C 2-8 dialkylaminocarbonyl;
• R a and R a′ are each, independently, H, C 1-6 alkyl, C 1-6 haloalkyl, C 2-6 alkenyl, C 2-6 alkynyl, aryl, cycloalkyl, heteroaryl or heterocycloalkyl;
• R b and R b′ are each, independently, H, C 1-6 alkyl, C 1-6 haloalkyl, C 2-6 alkenyl, C 2-6 alkynyl, aryl, cycloalkyl, heteroaryl or heterocycloalkyl; and
• R c and R d are each, independently, H, C 1-6 alkyl, C 1-6 haloalkyl, C 2-6 alkenyl, C 2-6 alkynyl, aryl, cycloalkyl, arylalkyl, or cycloalkylalkyl;
• R c and R d together with the N atom to which they are attached form a 4-, 5-, 6- or 7-membered heterocycloalkyl group
• —W 1 —W 2 —W 3 —W 4 is other than H.
• no more than two of D 1 , D 2 , and D 3 are N.
• no more than three of D 4 , D 5 , D 6 , and D 7 are N.
• no more than two of D 4 , D 5 , D 6 , and D 7 are N.
• the compound has Formula Ia.
• the compound has Formula Ib.
• the compound has Formula Ic.
• E is NR 2a .
• E is NH or NOH.
• G is N.
• E is NH and G is N.
• the compound has Formula Ia, E is NH or NOH, and G is N.
• Q 1 is N and Q 2 is CR 2c .
• each D 1 , D 2 , and D 3 is CR 1 .
• each D 1 , D 2 , and D 3 is CH.
• each D 4 , D 5 , and D 7 is CR 1 and D 6 is N.
• D 4 and D 7 are CH.
• D 5 is CR 1 and R 1 is H or halo.
• D 6 is CR 1 and R 1 is halo.
• D 6 is CF.
• D 6 is N.
• D 5 is CH or CF.
• —W 1 —W 2 —W 3 —W 4 is C 1-6 alkyl, aryl, arylalkyl, cycloalkyl, cycloalkylalkyl, heteroaryl, heteroarylalkyl, heterocycloalkyl or heterocycloalkylalkyl, each optionally substituted by 1, 2, or 3 halo, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 haloalkylcarbonyl, aryl, cycloalkyl, heteroaryl, heterocycloalkyl, —COOH, —COO—(C 1-4 alkyl), OH, C 1-4 alkoxy, C 1-4 haloalkoxy, hydroxyalkyl, CN, cyanoalkyl, alkylthio, arylthio, haloalkylthio, alkylsulfinyl, alkylsulfonyl, arylsulfinyl
• —W 1 —W 2 —W 3 —W 4 is C 1-6 alkyl, aryl, arylalkyl, cycloalkyl, heteroaryl, heterocycloalkyl, or heterocycloalkylalkyl, each optionally substituted by 1, 2, or 3 halo, C 1-4 alkyl, C 1-4 haloalkyl, C 1-4 haloalkylcarbonyl, aryl, —COO—(C 1-4 alkyl), OH, C 1-4 alkoxy, C 1-4 haloalkoxy, hydroxyalkyl, CN, cyanoalkyl, alkylthio, haloalkylthio, alkylsulfinyl, alkylsulfonyl, arylalkyloxy, aminocarbonyl, aminocarbonylalkyl, cyanoalkylcarbonyl, formyl, alkylcarbonyl, alkyloxycarbonylamino, alky
• —W 1 —W 2 —W 3 —W 4 is methyl, ethyl, propyl, butyl, pentyl, hexyl, phenyl, naphthyl, biphenyl, benzyl, phenylethyl, phenylpropyl, cyclopropyl, cyclohexyl, cyclohexenyl, bicyclo[2.2.1]hept-2-enyl, cyclopentyl, pyridyl, pyrryl, imidazolyl, isoxazolyl, thiazolyl, quinolinyl, piperidinyl, tetrahydrofuranyl, pyrrolidinyl, benzo[1,3]dioxolyl, (piperidin-4-yl)methyl, (piperidin-3-yl)methyl, (tetrahydropyran-4-yl)-methyl, (tetrahydrothiopyran
• the compound has Formula Ia or IIb:
• the compound has Formula IVa or IVb:
• the compound has Formula IVc or IVd:
• the compound has Formula IVe:
• the compound has Formula Va or Vb:
• the compound has Formula VIa or VIb:
• C 1-6 alkyl is specifically intended to individually disclose methyl, ethyl, C 3 alkyl, C 4 alkyl, C 5 alkyl, and C 6 alkyl.
• each variable can be a different moiety selected from the Markush group defining the variable.
• the two R groups can represent different moieties selected from the Markush group defined for R.
• stable refers to a compound that is sufficiently robust to survive isolation to a useful degree of purity from a reaction mixture, and preferably capable of formulation into an efficacious therapeutic agent.
• alkyl is meant to refer to a saturated hydrocarbon group which is straight-chained or branched.
• Example alkyl groups include methyl (Me), ethyl (Et), propyl (e.g., n-propyl and isopropyl), butyl (e.g., n-butyl, isobutyl, t-butyl), pentyl (e.g., n-pentyl, isopentyl, neopentyl), and the like.
• An alkyl group can contain from 1 to about 20, from 2 to about 20, from 1 to about 10, from 1 to about 8, from 1 to about 6, from 1 to about 4, or from 1 to about 3 carbon atoms.
• alkylenyl refers to a divalent alkyl linking group.
• alkenyl refers to an alkyl group having one or more double carbon-carbon bonds.
• Example alkenyl groups include ethenyl, propenyl, cyclohexenyl, and the like.
• alkenylenyl refers to a divalent linking alkenyl group.
• haloalkyl refers to an alkyl group having one or more halogen substituents.
• Example haloalkyl groups include CF 3 , C 2 F 5 , CHF 2 , CCl 3 , CHCl 2 , C 2 Cl 5 , and the like.
• aryl refers to monocyclic or polycyclic (e.g., having 2, 3 or 4 fused rings) aromatic hydrocarbons such as, for example, phenyl, naphthyl, anthracenyl, phenanthrenyl, and the like. In some embodiments, aryl groups have from 6 to about 20 carbon atoms.
• cycloalkyl refers to non-aromatic cyclic hydrocarbons including cyclized alkyl, alkenyl, and alkynyl groups. Cycloalkyl groups can include mono- or polycyclic (e.g., having 2, 3 or 4 fused rings) groups. Ring-forming carbon atoms of a cycloalkyl group can be optionally substituted by oxo or sulfido.
• Example cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclopentenyl, cyclohexenyl, cyclohexadienyl, cycloheptatrienyl, norbornyl, norpinyl, norcamyl, adamantyl, and the like.
• cycloalkyl moieties that have one or more aromatic rings fused (i.e., having a bond in common with) to the cycloalkyl ring, for example, benzo or thienyl derivatives of cyclopentane, cylcopentene, cyclohexane, and the like.
• a cycloalkyl group containing a fused aromatic ring can be attached through any ring-forming atom including a ring-forming atom of the fused aromatic ring.
• heteroaryl refers to an aromatic heterocycle having at least one heteroatom ring member such as sulfur, oxygen, or nitrogen.
• Heteroaryl groups include monocyclic and polycyclic (e.g., having 2, 3 or 4 fused rings) systems.
• heteroaryl groups include without limitation, pyridyl, pyrimidinyl, pyrazinyl, pyridazinyl, triazinyl, furyl, quinolyl, isoquinolyl, thienyl, imidazolyl, thiazolyl, indolyl, pyrryl, oxazolyl, benzofuryl, benzothienyl, benzthiazolyl, isoxazolyl, pyrazolyl, triazolyl, tetrazolyl, indazolyl, 1,2,4-thiadiazolyl, isothiazolyl, benzothienyl, purinyl, carbazolyl, benzimidazolyl, indolinyl, and the like.
• the heteroaryl group has from 1 to about 20 carbon atoms, and in further embodiments from about 3 to about 20 carbon atoms. In some embodiments, the heteroaryl group contains 3 to about 14, 4 to about 14, 3 to about 7, or 5 to 6 ring-forming atoms. In some embodiments, the heteroaryl group has 1 to about 4, 1 to about 3, or 1 to 2 heteroatoms.
• heterocycloalkyl refers to non-aromatic heterocycles including cyclized alkyl, alkenyl, and alkynyl groups where one or more of the ring-forming carbon atoms is replaced by a heteroatom such as an O, N, or S atom.
• Heterocycloalkyl groups include monocyclic and polycyclic (e.g., having 2, 3 or 4 fused rings) systems.
• a heterocycloalkyl group can be attached through a ring-forming carbon atom or a ring-forming heteroatom.
• heterocycloalkyl groups include morpholino, thiomorpholino, piperazinyl, tetrahydrofuranyl, tetrahydrothienyl, 2,3-dihydrobenzofuryl, 1,3-benzodioxole, benzo-1,4-dioxane, piperidinyl, pyrrolidinyl, isoxazolidinyl, isothiazolidinyl, pyrazolidinyl, oxazolidinyl, thiazolidinyl, imidazolidinyl, and the like.
• Ring-forming carbon atoms and heteroatoms of a heterocycloalkyl group can be optionally substituted by oxo or sulfido.
• Also included in the definition of heterocycloalkyl are moieties that have one or more aromatic rings fused (i.e., having a bond in common with) to the nonaromatic heterocyclic ring, for example phthalimidyl, naphthalimidyl, and benzo derivatives of heterocycles such as indolene and isoindolene groups.
• a heterocycloalkyl group containing a fused aromatic ring can be attached through any ring-forming atom including a ring-forming atom of the fused aromatic ring.
• the heterocycloalkyl group has from 1 to about 20 carbon atoms, and in further embodiments from about 3 to about 20 carbon atoms. In some embodiments, the heterocycloalkyl group contains 3 to about 14, 4 to about 14, 3 to about 7, or 5 to 6 ring-forming atoms. In some embodiments, the heterocycloalkyl group has 1 to about 4, 1 to about 3, or 1 to 2 heteroatoms. In some embodiments, the heterocycloalkyl group contains 0 to 3 double or triple bonds. In some embodiments, the heterocycloalkyl group contains 0 to 2 double or triple bonds.
• halo or “halogen” includes fluoro, chloro, bromo, and iodo.
• arylalkyl refers to alkyl substituted by aryl and “cycloalkylalkyl” refers to alkyl substituted by cycloalkyl.
• An example arylalkyl group is benzyl.
• An example cyclocalkylalkyl is cyclopropylmethyl.
• alkoxy or “alkyloxy” refers to an —O-alkyl group.
• Example alkoxy groups include methoxy, ethoxy, propoxy (e.g., n-propoxy and isopropoxy), t-butoxy, and the like.
• haloalkoxy refers to an —O-haloalkyl group.
• An example haloalkoxy group is OCF 3 .
• aryloxy refers to an —O-aryl group.
• An example aryloxy is phenyloxy, i.e., —O-phenyl.
• arylalkyloxy refers to an arylalkyl-O— group (i.e. —O-alkyl-aryl).
• An example arylalkyloxy is benzyloxy.
• cylcoalkyloxy refers to an —O-cycloalkyl group.
• An example cylcoalkyloxy group is —O-cylclopropyl.
• heteroarylalkyl refers to alkyl substituted by heteroaryl.
• An example of heteroarylalkyl is (pyridin-2-yl)-methyl.
• heterocycloalkylalkyl refers to alkyl substituted by heterocylcloalkyl.
• An example of heterocycloalkylalkyl is (tetrahydropyran-4-yl)-methyl.
• cyano refers to CN.
• cyanoalkyl refers to alkyl substituted by cyano.
• alkylthio refers to an —S-alkyl group.
• Example alkylthio groups include methylthio (—SCH 3 ), ethylthio (—SCH 2 CH 3 ), and the like.
• haloalkylthio refers to an —S-haloalkyl group.
• An example haloalkylthio group is —SCF 3 .
• arylthio refers to an —S-aryl group.
• An example arylthio group is —S-phenyl.
• sulfinyl refers to a bivalent group —S(O)—.
• alkylsulfinyl refers to —S(O)alkyl.
• arylsulfinyl refers to —S(O)aryl.
• arylsulfonyl refers to —S(O) 2 -aryl.
• pentahalosulfanyl refers to moieties of formula —SX 5 where each X is independently selected from F, Cl, Br, or I.
• X is independently selected from F, Cl, Br, or I.
• amino refers to NH 2 .
• dialkylamino refers to an amino group substituted by two alkyl groups.
• carbonyl refers to a bivalent group —C(O)—.
• alkylcarbonyl refers to —C(O)-alkyl.
• cyanoalkylcarbonyl refers to —C(O)-(cyanoalkyl).
• aminocarbonyl refers to —C(O)NH 2 .
• alkylaminocarbonyl refers to an aminocarbonyl group wherein the amino group is substituted by an alkyl group, i.e., —C(O)NH-alkyl.
• dialkylaminocarbonyl refers to an aminocarbonyl group wherein the amino group is substituted by two alkyl groups.
• alkylcarbonylamino refers to —NHC(O)-alkyl.
• alkyloxycarbonylamino refers to —NHC(O)—O-alkyl.
• alkyl alkenyl
• alkynyl alkynyl
• aryl cycloalkyl
• heteroaryl heterocycloalkyl
• heterocycloalkyl are also meant to encompass the corresponding divalent linking moieties (e.g., alkylenyl, alkenylenyl, etc.) when used in a linking context such as in variables W 1 , W 2 , and W 3 .
• the compounds described herein can be asymmetric (e.g., having one or more stereocenters). All stereoisomers, such as enantiomers and diastereomers, are intended unless otherwise indicated.
• Compounds of the present invention that contain asymmetrically substituted carbon atoms can be isolated in optically active or racemic forms. Methods on how to prepare optically active forms from optically active starting materials are known in the art, such as by resolution of racemic mixtures or by stereoselective synthesis. Many geometric isomers of olefins, C ⁇ N double bonds, and the like can also be present in the compounds described herein, and all such stable isomers are contemplated in the present invention. Cis and trans geometric isomers of the compounds of the present invention are described and may be isolated as a mixture of isomers or as separated isomeric forms.
• An example method includes fractional recrystallizaion using a “chiral resolving acid” which is an optically active, salt-forming organic acid.
• Suitable resolving agents for fractional recrystallization methods are, for example, optically active acids, such as the D and L forms of tartaric acid, diacetyltartaric acid, dibenzoyltartaric acid, mandelic acid, malic acid, lactic acid or the various optically active camphorsulfonic acids such as ⁇ -camphorsulfonic acid.
• resolving agents suitable for fractional crystallization methods include stereoisomerically pure forms of ⁇ -methylbenzylamine (e.g., S and R forms, or diastereomerically pure forms), 2-phenylglycinol, norephedrine, ephedrine, N-methylephedrine, cyclohexylethylamine, 1,2-diaminocyclohexane, and the like.
• Resolution of racemic mixtures can also be carried out by elution on a column packed with an optically active resolving agent (e.g., dinitrobenzoylphenylglycine).
• an optically active resolving agent e.g., dinitrobenzoylphenylglycine
• Suitable elution solvent composition can be determined by one skilled in the art.
• Tautomeric forms result from the swapping of a single bond with an adjacent double bond together with the concomitant migration of a proton.
• Tautomeric forms include prototropic tautomers which are isomeric protonation states having the same empirical formula and total charge.
• Example prototropic tautomers include ketone-enol pairs, amide-imidic acid pairs, lactam-lactim pairs, amide-imidic acid pairs, enamine-imine pairs, and annular forms where a proton can occupy two or more positions of a heterocyclic system, for example, 1H- and 3H-imidazole, 1H-, 2H- and 4H-1,2,4-triazole, 1H- and 2H-isoindole, and 1H- and 2H-pyrazole.
• Tautomeric forms can be in equilibrium or sterically locked into one form by appropriate substitution.
• Compounds of the invention further include hydrated, solvated, anhydrate, and non-solvated solid forms.
• Compounds of the invention can also include all isotopes of atoms occurring in the intermediates or final compounds.
• Isotopes include those atoms having the same atomic number but different mass numbers.
• isotopes of hydrogen include tritium and deuterium.
• Compounds of the invention can be in isolated form.
• An isolated compound is one that has been at least partially or substantially separated from the environment in which is was formed or discovered.
• phrases “pharmaceutically acceptable” is employed herein to refer to those compounds, materials, compositions, and/or dosage forms which are, within the scope of sound medical judgement, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.
• the present invention also includes pharmaceutically acceptable salts of the compounds described herein.
• pharmaceutically acceptable salts refers to derivatives of the disclosed compounds wherein the parent compound is modified by converting an existing acid or base moiety to its salt form.
• pharmaceutically acceptable salts include, but are not limited to, mineral or organic acid salts of basic residues such as amines; alkali or organic salts of acidic residues such as carboxylic acids; and the like.
• the pharmaceutically acceptable salts of the present invention include the conventional non-toxic salts or the quaternary ammonium salts of the parent compound formed, for example, from non-toxic inorganic or organic acids.
• the pharmaceutically acceptable salts of the present invention can be synthesized from the parent compound which contains a basic or acidic moiety by conventional chemical methods.
• such salts can be prepared by reacting the free acid or base forms of these compounds with a stoichiometric amount of the appropriate base or acid in water or in an organic solvent, or in a mixture of the two; generally, nonaqueous media like ether, ethyl acetate, ethanol, isopropanol, or acetonitrile are preferred.
• Lists of suitable salts are found in Remington's Pharmaceutical Sciences, 17th ed., Mack Publishing Company, Easton, Pa., 1985, p. 1418 and Journal of Pharmaceutical Science, 66, 2 (1977), each of which is incorporated herein by reference in its entirety.
• prodrugs refer to any covalently bonded carriers which release the active parent drug when administered to a mammalian subject.
• Prodrugs can be prepared by modifying functional groups present in the compounds in such a way that the modifications are cleaved, either in routine manipulation or in vivo, to the parent compounds.
• Prodrugs include compounds wherein hydroxyl, amino, sulfhydryl, or carboxyl groups are bonded to any group that, when administered to a mammalian subject, cleaves to form a free hydroxyl, amino, sulfhydryl, or carboxyl group respectively.
• prodrugs include, but are not limited to, acetate, formate and benzoate derivatives of alcohol and amine functional groups in the compounds of the invention. Preparation and use of prodrugs is discussed in T. Higuchi and V. Stella, “Pro-drugs as Novel Delivery Systems,” Vol. 14 of the A.C.S. Symposium Series, and in Bioreversible Carriers in Drug Design , ed. Edward B. Roche, American Pharmaceutical Association and Pergamon Press, 1987, both of which are hereby incorporated by reference in their entirety.
• the reactions for preparing compounds of the invention can be carried out in suitable solvents which can be readily selected by one of skill in the art of organic synthesis.
• suitable solvents can be substantially nonreactive with the starting materials (reactants), the intermediates, or products at the temperatures at which the reactions are carried out, e.g., temperatures which can range from the solvent's freezing temperature to the solvent's boiling temperature.
• a given reaction can be carried out in one solvent or a mixture of more than one solvent.
• suitable solvents for a particular reaction step can be selected.
• Preparation of compounds of the invention can involve the protection and deprotection of various chemical groups.
• the need for protection and deprotection, and the selection of appropriate protecting groups can be readily determined by one skilled in the art.
• the chemistry of protecting groups can be found, for example, in T. W. Green and P. G. M. Wuts, Protective Groups in Organic Synthesis, 3rd. Ed., Wiley & Sons, Inc., New York (1999), which is incorporated herein by reference in its entirety.
• Reactions can be monitored according to any suitable method known in the art.
• product formation can be monitored by spectroscopic means, such as nuclear magnetic resonance spectroscopy (e.g., 1 H or 13 C) infrared spectroscopy, spectrophotometry (e.g., UV-visible), or mass spectrometry, or by chromatography such as high performance liquid chromatography (HPLC) or thin layer chromatography.
• spectroscopic means such as nuclear magnetic resonance spectroscopy (e.g., 1 H or 13 C) infrared spectroscopy, spectrophotometry (e.g., UV-visible), or mass spectrometry
• chromatography such as high performance liquid chromatography (HPLC) or thin layer chromatography.
• Compounds of formula 1-1 can be coupled with a trialkylsilylacetylene such as trimethylsilyl acetylene in the presence of a palladium catalyst such as Pd(PPh 3 ) 2 Cl 2 and an amine such as triethyl amine and CuI under Sonogashira conditions to give the coupling product 1-2.
• Compound of formula 1-2 can be desilylated by a fluoride salt such as tetrabutylammonium fluoride in an inert solvent such as tetrahydrofuran to give the acetylenic compounds of formula 1-3.
• Compounds of formula 3 can be coupled with 2-nitrohaloaryls or 2-nitroheteroaryls of formula 1-4 (X is a leaving group like halo) under Sonogashira conditions described earlier to give the coupled products of formula 1-5.
• Compounds of formula 1-5 can be oxidized to the corresponding diketones of formula 1-6 with the use of an oxidant such as KMnO 4 in a solvent such as acetone under conditions described by Srinivasan, N. S. and Lee Donald G. [Journal of Organic Chemistry (1979), 44(9), 1574].
• Compounds of formula 1-7 can be converted to compounds of formula 1-8 by reduction of the nitro group to the corresponding amine compound using a reducing agent such as Na 2 S 2 O 4 or Zn and acid, or by catalytic hydrogenation, followed by a cyclization reaction in which the amino group of the corresponding amine compound displaces the fluorine on the 2-position of the pyridine under thermal condition or acid or base catalysis.
• compounds of formula 2-7 and/or 2-8 can be prepared by the synthetic route outlined.
• a nicotinic acid derivative 2-1 J and J′ can be halogen other leaving group
• a secondary amine HNR′R′′ such as diethylamine
• Amide 2-2 can be coupled with an aryl- or heteroaryl-amine 2-3 by utilizing a base such as lithium, sodium or potassium hexamethyldisilazide, lithium, sodium or potassium dialkylamide, sodium hydride, or potassium hydride, in a solvent such as tetrahydrofuran, 1,4-dioxane, dimethylformamide, or dimethylsulfoxide to give the corresponding amine compound of formula 2-4.
• the compounds of formula 2-4 can be cyclized to the corresponding ketone 2-5 by treatment with a strong base such as a lithium dilakylamide in an organic solvent such as tetrahydrofuran.
• the compound of formula 2-5 can be converted to the corresponding ketoxime 2-6 by treatment with a nitrite such as NaNO 2 in acetic acid.
• the hydroxyl tetracyclic imidazole 2-7 can be deoxygenated by treatment with an appropriate reagent such as a trialkoxy phoshite or TiCl 3 , to give a compound of formula 2-8.
• compounds of formula 2-5 can be prepared by an alternative synthetic route.
• a base such as butyllithium in a solvent such as tetrahydrofuran
• the dianion of 3-2 (Pr is a suitable protecting group such as tert-butyloxycarbonyl) can be formed and added to a nicotinic aldehyde derivative 3-1 (J can be halogen or other leaving group) to provide the alcohol product 3-3.
• Removal of the Pr protecting group using acidic conditions such as trifluoroacetic acid provides the amine 3-4 which can be cyclized to the azepine 3-5 using a suitable base such as potassium tert-butoxide in a solvent such as tetrahydrofuran.
• Oxidation of the alcohol provides compounds of formula 2-5.
• compounds of formula 2-5 can be converted to compounds of formula 4-2 by reacting the ketone 2-5 with a reagent such as 1,1-dimethoxy-N,N-dimethylmethanamine to provide the dialklyaminomethylene derivative 4-1 (R′ and R′′ are alkyl groups such as methyl).
• a hydrazine derivative can then be added to 4-1 in a suitable solvent such as ethanol to provide pyrazole compounds of formula 4-2.
• Related ketones 2-5a can be made by analogous methods to those shown in Schemes 2 and 3 which can serve as the basis for preparations of related compounds 4-1a and 4-2a according to Scheme 4.
• Compounds of the invention can modulate activity of one or more Janus kinases (JAKs).
• the term “modulate” is meant to refer to an ability to increase or decrease the activity of one or more members of the JAK family of kinases.
• compounds of the invention can be used in methods of modulating a JAK by contacting the JAK with any one or more of the compounds or compositions described herein.
• compounds of the present invention can act as inhibitors of one or more JAKs.
• compounds of the present invention can act to stimulate the activity of one or more JAKs.
• the compounds of the invention can be used to modulate activity of a JAK in an individual in need of modulation of the receptor by administering a modulating amount of a compound of Formula Ia, Ib, or Ic.
• JAKs to which the present compounds bind and/or modulate include any member of the JAK family.
• the JAK is JAK1, JAK2, JAK3 or TYK2.
• the JAK is JAK1 or JAK2.
• the JAK is JAK2.
• the JAK is JAK3.
• the compounds of the invention can be selective.
• selective is meant that the compound binds to or inhibits a JAK with greater affinity or potency, respectively, compared to at least one other JAK.
• the compounds of the invention are selective inhibitors of JAK1 or JAK2 over JAK3 and/or TYK2.
• the compounds of the invention are selective inhibitors of JAK2 (e.g., over JAK1, JAK3 and TYK2).
• a compound which is selective for JAK2 over JAK3 and which is useful in the treatment of cancer can offer the additional advantage of having fewer immunosuppressive side effects.
• Selectivity can be at least about 5-fold, 10-fold, at least about 20-fold, at least about 50-fold, at least about 100-fold, at least about 200-fold, at least about 500-fold or at least about 1000-fold. Selectivity can be measured by methods routine in the art. In some embodiments, selectivity can be tested at the Km of each enzyme. In some embodiments, selectivity of compounds of the invention for JAK2 over JAK3 can be determined by the cellular ATP concentration.
• a JAK-associated disease can include any disease, disorder or condition that is directly or indirectly linked to expression or activity of the JAK, including overexpression and/or abnormal activity levels.
• a JAK-associated disease can also include any disease, disorder or condition that can be prevented, ameliorated, or cured by modulating JAK activity.
• JAK-associated diseases include diseases involving the immune system including, for example, organ transplant rejection (e.g., allograft rejection and graft versus host disease).
• organ transplant rejection e.g., allograft rejection and graft versus host disease.
• JAK-associated diseases include autoimmune diseases such as multiple sclerosis, rheumatoid arthritis, juvenile arthritis, type I diabetes, lupus, psoriasis, inflammatory bowel disease, ulcerative colitis, Crohn's disease, myasthenia gravis, immunoglobulin nephropathies, autoimmune thyroid disorders, and the like.
• the autoimmune disease is an autoimmune bullous skin disorder such as pemphigus vulgaris (PV) or bullous pemphigoid (BP).
• JAK-associated diseases include allergic conditions such as asthma, food allergies, atopic dermatitis and rhinitis.
• Further examples of JAK-associated diseases include viral diseases such as Epstein Barr Virus (EBV), Hepatitis B, Hepatitis C, HIV, HTLV 1, Varicella-Zoster Virus (VZV) and Human Papilloma Virus (HPV).
• EBV Epstein Barr Virus
• HBV Human Papilloma Virus
• HPV Human Papilloma Virus
• the JAK-associated disease is cancer including those characterized by solid tumors (e.g., prostate cancer, renal cancer, hepatic cancer, pancreatic cancer, gastric cancer, breast cancer, lung cancer, cancers of the head and neck, thyroid cancer, glioblastoma, etc.), hematological cancers (e.g., lymphoma, leukemia such as acute lymphoblastic leukemia, or multiple myeloma), and skin cancer such as cutaneous T-cell lymphoma (CTCL) and cutaneous B-cell lymphoma.
• CTCL cutaneous T-cell lymphoma
• Example cutaneous T-cell lymphomas include Sezary syndrome and mycosis fungoides.
• the cancer is of neuroectodermal and/or epidermal origin such as, for example, melanoma, basal cell carcinoma, squamous cell carcinoma, and the like.
• JAK-associated diseases can further include those characterized by expression of a mutant JAK2 such as those having at least one mutation in the pseudo-kinase domain (e.g., JAK2V617F) or a mutant JAK3 (see, e.g., Walters, D. K. et al. Cancer Cell, 2006, 10, 65).
• a mutant JAK2 such as those having at least one mutation in the pseudo-kinase domain (e.g., JAK2V617F) or a mutant JAK3 (see, e.g., Walters, D. K. et al. Cancer Cell, 2006, 10, 65).
• JAK-associated diseases can further include myeloproliferative disorders (MPDs) such as polycythemia vera (PV), essential thrombocythemia (ET), myeloid metaplasia with myelofibrosis (MMM), chronic myelogenous leukemia (CML), chronic myelomonocytic leukemia (CMML), hypereosinophilic syndrome (HES), systemic mast cell disease (SMCD), and the like.
• MPDs myeloproliferative disorders
• PV polycythemia vera
• ET essential thrombocythemia
• MMM myeloid metaplasia with myelofibrosis
• CML chronic myelogenous leukemia
• CMML chronic myelomonocytic leukemia
• HES hypereosinophilic syndrome
• SMCD systemic mast cell disease
• JAK-associated diseases include inflammation and inflammatory diseases.
• Example inflammatory diseases include inflammatory diseases of the eye (e.g., ulceris, uveitis, scleritis, conjunctivitis, or related disease), inflammatory diseases of the respiratory tract (e.g., the upper respiratory tract including the nose and sinuses such as rhinitis or sinusistis or the lower respiratory tract including bronchitis, chronic obstructive pulmonary disease, and the like), inflammatory myopathy such as myocarditis, and other inflammatory diseases.
• JAK inhibitors described herein can further be used to treat ischemia reperfusion injuries or a disease or condition related to an inflammatory ischemic event such as stroke or cardiac arrest.
• JAK inhibitors described herein can further be used to treat anorexia, cachexia, or fatigue such as that resulting from or associated with cancer.
• JAK inhibitors described herein can further be used to treat rheumatoid arthritis, Kaposi's sarcoma, or Castleman's disease.
• contacting refers to the bringing together of indicated moieties in an in vitro system or an in vivo system.
• “contacting” a JAK with a compound of the invention includes the administration of a compound of the present invention to an individual or patient, such as a human, having a JAK, as well as, for example, introducing a compound of the invention into a sample containing a cellular or purified preparation containing the JAK.
• the term “individual” or “patient,” used interchangeably, refers to any animal, including mammals, preferably mice, rats, other rodents, rabbits, dogs, cats, swine, cattle, sheep, horses, or primates, and most preferably humans.
• preventing the disease for example, preventing a disease, condition or disorder in an individual who may be predisposed to the disease, condition or disorder but does not yet experience or display the pathology or symptomatology of the disease;
• inhibiting the disease for example, inhibiting a disease, condition or disorder in an individual who is experiencing or displaying the pathology or symptomatology of the disease, condition or disorder (i.e., arresting further development of the pathology and/or symptomatology), and
• ameliorating the disease for example, ameliorating a disease, condition or disorder in an individual who is experiencing or displaying the pathology or symptomatology of the disease, condition or disorder (i.e., reversing the pathology and/or symptomatology).
• One or more additional pharmaceutical agents such as, for example, chemotherapeutics, anti-inflammatory agents, steroids, immunosuppressants, as well as Bcr-Abl, Flt-3, RAF and FAK kinase inhibitors such as, for example, those described in WO 2006/056399, or other agents can be used in combination with the compounds of the present invention for treatment of JAK-associated diseases, disorders or conditions.
• the one or more additional pharmaceutical agents can be administered to a patient simultaneously or sequentially.
• Example chemotherapeutic include proteosome inhibitors (e.g., bortezomib), thalidomide, revlimid, and DNA-damaging agents such as melphalan, doxorubicin, cyclophosphamide, vincristine, etoposide, carmustine, and the like.
• proteosome inhibitors e.g., bortezomib
• thalidomide thalidomide
• revlimid thalidomide
• DNA-damaging agents such as melphalan, doxorubicin, cyclophosphamide, vincristine, etoposide, carmustine, and the like.
• Example Bcr-Abl inhibitors include the compounds, and pharmaceutically acceptable salts thereof, of the genera and species disclosed in U.S. Pat. No. 5,521,184, WO 04/005281, EP2005/009967, EP2005/010408, and U.S. Ser. No. 60/578,491.
• Example suitable Flt-3 inhibitors include compounds, and their pharmaceutically acceptable salts, as disclosed in WO 03/037347, WO 03/099771, and WO 04/046120.
• Example suitable RAF inhibitors include compounds, and their pharmaceutically acceptable salts, as disclosed in WO 00/09495 and WO 05/028444.
• Example suitable FAK inhibitors include compounds, and their pharmaceutically acceptable salts, as disclosed in WO 04/080980, WO 04/056786, WO 03/024967, WO 01/064655, WO 00/053595, and WO 01/014402.
• one or more JAK inhibitors of the invention can be used in combination with a chemotherapeutic in the treatment of cancer, such as multiple myeloma, and may improve the treatment response as compared to the response to the chemotherapeutic agent alone, without exacerbation of its toxic effects.
• additional pharmaceutical agents used in the treatment of multiple myeloma can include, without limitation, melphalan, melphalan plus prednisone [MP], doxorubicin, dexamethasone, and Velcade (bortezomib).
• Further additional agents used in the treatment of multiple myeloma include Bcr-Abl, Flt-3, RAF and FAK kinase inhibitors.
• Additive or synergistic effects are desirable outcomes of combining a JAK inhibitor of the present invention with an additional agent.
• resistance of multiple myeloma cells to agents such as dexamethasone may be reversible upon treatment with a JAK inhibitor of the present invention.
• the agents can be combined with the present compounds in a single or continuous dosage form, or the agents can be administered simultaneously or sequentially as separate dosage forms.
• a corticosteroid such as dexamethsone is administered to a patient in combination with at least one JAK inhibitor where the dexamethasone is administered intermittently as opposed to continuously.
• combinations of one or more JAK inhibitors of the invention with other therapeutic agents can be administered to a patient prior to, during, and/or after a bone marrow transplant or stem cell transplant.
• the compounds of the invention can be administered in the form of pharmaceutical compositions.
• These compositions can be prepared in a manner well known in the pharmaceutical art, and can be administered by a variety of routes, depending upon whether local or systemic treatment is desired and upon the area to be treated. Administration may be topical (including transdermal, epidermal, ophthalmic and to mucous membranes including intranasal, vaginal and rectal delivery), pulmonary (e.g., by inhalation or insufflation of powders or aerosols, including by nebulizer; intratracheal or intranasal), oral or parenteral.
• topical including transdermal, epidermal, ophthalmic and to mucous membranes including intranasal, vaginal and rectal delivery
• pulmonary e.g., by inhalation or insufflation of powders or aerosols, including by nebulizer; intratracheal or intranasal
• oral or parenteral e.g., by inhal
• Parenteral administration includes intravenous, intraarterial, subcutaneous, intraperitoneal intramuscular or injection or infusion; or intracranial, e.g., intrathecal or intraventricular, administration.
• Parenteral administration can be in the form of a single bolus dose, or may be, for example, by a continuous perfusion pump.
• Pharmaceutical compositions and formulations for topical administration may include transdermal patches, ointments, lotions, creams, gels, drops, suppositories, sprays, liquids and powders.
• Conventional pharmaceutical carriers, aqueous, powder or oily bases, thickeners and the like may be necessary or desirable. Coated condoms, gloves and the like may also be useful.
• compositions which contain, as the active ingredient, one or more of the compounds of the invention above in combination with one or more pharmaceutically acceptable carriers (excipients).
• the active ingredient is typically mixed with an excipient, diluted by an excipient or enclosed within such a carrier in the form of, for example, a capsule, sachet, paper, or other container.
• the excipient serves as a diluent, it can be a solid, semi-solid, or liquid material, which acts as a vehicle, carrier or medium for the active ingredient.
• compositions can be in the form of tablets, pills, powders, lozenges, sachets, cachets, elixirs, suspensions, emulsions, solutions, syrups, aerosols (as a solid or in a liquid medium), ointments containing, for example, up to 10% by weight of the active compound, soft and hard gelatin capsules, suppositories, sterile injectable solutions, and sterile packaged powders.
• the active compound can be milled to provide the appropriate particle size prior to combining with the other ingredients. If the active compound is substantially insoluble, it can be milled to a particle size of less than 200 mesh. If the active compound is substantially water soluble, the particle size can be adjusted by milling to provide a substantially uniform distribution in the formulation, e.g. about 40 mesh.
• excipients include lactose, dextrose, sucrose, sorbitol, mannitol, starches, gum acacia, calcium phosphate, alginates, tragacanth, gelatin, calcium silicate, microcrystalline cellulose, polyvinylpyrrolidone, cellulose, water, syrup, and methyl cellulose.
• the formulations can additionally include: lubricating agents such as talc, magnesium stearate, and mineral oil; wetting agents; emulsifying and suspending agents; preserving agents such as methyl- and propylhydroxy-benzoates; sweetening agents; and flavoring agents.
• the compositions of the invention can be formulated so as to provide quick, sustained or delayed release of the active ingredient after administration to the patient by employing procedures known in the art.
• compositions can be formulated in a unit dosage form, each dosage containing from about 5 to about 1000 mg (1 g), more usually about 100 to about 500 mg, of the active ingredient.
• unit dosage forms refers to physically discrete units suitable as unitary dosages for human subjects and other mammals, each unit containing a predetermined quantity of active material calculated to produce the desired therapeutic effect, in association with a suitable pharmaceutical excipient.
• the active compound can be effective over a wide dosage range and is generally administered in a pharmaceutically effective amount. It will be understood, however, that the amount of the compound actually administered will usually be determined by a physician, according to the relevant circumstances, including the condition to be treated, the chosen route of administration, the actual compound administered, the age, weight, and response of the individual patient, the severity of the patient's symptoms, and the like.
• the principal active ingredient is mixed with a pharmaceutical excipient to form a solid preformulation composition containing a homogeneous mixture of a compound of the present invention.
• a solid preformulation composition containing a homogeneous mixture of a compound of the present invention.
• the active ingredient is typically dispersed evenly throughout the composition so that the composition can be readily subdivided into equally effective unit dosage forms such as tablets, pills and capsules.
• This solid preformulation is then subdivided into unit dosage forms of the type described above containing from, for example, about 0.1 to about 1000 mg of the active ingredient of the present invention.
• the tablets or pills of the present invention can be coated or otherwise compounded to provide a dosage form affording the advantage of prolonged action.
• the tablet or pill can comprise an inner dosage and an outer dosage component, the latter being in the form of an envelope over the former.
• the two components can be separated by an enteric layer which serves to resist disintegration in the stomach and permit the inner component to pass intact into the duodenum or to be delayed in release.
• enteric layers or coatings such materials including a number of polymeric acids and mixtures of polymeric acids with such materials as shellac, cetyl alcohol, and cellulose acetate.
• liquid forms in which the compounds and compositions of the present invention can be incorporated for administration orally or by injection include aqueous solutions, suitably flavored syrups, aqueous or oil suspensions, and flavored emulsions with edible oils such as cottonseed oil, sesame oil, coconut oil, or peanut oil, as well as elixirs and similar pharmaceutical vehicles.
• compositions for inhalation or insufflation include solutions and suspensions in pharmaceutically acceptable, aqueous or organic solvents, or mixtures thereof, and powders.
• the liquid or solid compositions may contain suitable pharmaceutically acceptable excipients as described supra.
• the compositions are administered by the oral or nasal respiratory route for local or systemic effect.
• Compositions in can be nebulized by use of inert gases. Nebulized solutions may be breathed directly from the nebulizing device or the nebulizing device can be attached to a face masks tent, or intermittent positive pressure breathing machine. Solution, suspension, or powder compositions can be administered orally or nasally from devices which deliver the formulation in an appropriate manner.
• compositions can be administered to a patient already suffering from a disease in an amount sufficient to cure or at least partially arrest the symptoms of the disease and its complications. Effective doses will depend on the disease condition being treated as well as by the judgment of the attending clinician depending upon factors such as the severity of the disease, the age, weight and general condition of the patient, and the like.
• compositions administered to a patient can be in the form of pharmaceutical compositions described above. These compositions can be sterilized by conventional sterilization techniques, or may be sterile filtered. Aqueous solutions can be packaged for use as is, or lyophilized, the lyophilized preparation being combined with a sterile aqueous carrier prior to administration.
• the pH of the compound preparations typically will be between 3 and 11, more preferably from 5 to 9 and most preferably from 7 to 8. It will be understood that use of certain of the foregoing excipients, carriers, or stabilizers will result in the formation of pharmaceutical salts.
• the therapeutic dosage of the compounds of the present invention can vary according to, for example, the particular use for which the treatment is made, the manner of administration of the compound, the health and condition of the patient, and the judgment of the prescribing physician.
• the proportion or concentration of a compound of the invention in a pharmaceutical composition can vary depending upon a number of factors including dosage, chemical characteristics (e.g., hydrophobicity), and the route of administration.
• the compounds of the invention can be provided in an aqueous physiological buffer solution containing about 0.1 to about 10% w/v of the compound for parenteral administration. Some typical dose ranges are from about 1 ⁇ g/kg to about 1 g/kg of body weight per day.
• the dose range is from about 0.01 mg/kg to about 100 mg/kg of body weight per day.
• the dosage is likely to depend on such variables as the type and extent of progression of the disease or disorder, the overall health status of the particular patient, the relative biological efficacy of the compound selected, formulation of the excipient, and its route of administration. Effective doses can be extrapolated from dose-response curves derived from in vitro or animal model test systems.
• compositions of the invention can further include one or more additional pharmaceutical agents such as a chemotherapeutic, steroid, anti-inflammatory compound, or immunosuppressant, examples of which are listed hereinabove.
• additional pharmaceutical agents such as a chemotherapeutic, steroid, anti-inflammatory compound, or immunosuppressant, examples of which are listed hereinabove.
• Another aspect of the present invention relates to labeled compounds of the invention (radio-labeled, fluorescent-labeled, etc.) that would be useful not only in imaging techniques but also in assays, both in vitro and in vivo, for localizing and quantitating JAK in tissue samples, including human, and for identifying JAK ligands by inhibition binding of a labeled compound. Accordingly, the present invention includes JAK assays that contain such labeled compounds.
• the present invention further includes isotopically-labeled compounds of the invention.
• An “isotopically” or “radio-labeled” compound is a compound of the invention where one or more atoms are replaced or substituted by an atom having an atomic mass or mass number different from the atomic mass or mass number typically found in nature (i.e., naturally occurring).
• Suitable radionuclides that may be incorporated in compounds of the present invention include but are not limited to 2 H (also written as D for deuterium), 3 H (also written as T for tritium), 11 C, 13 C, 14 C, 13 N, 15 N, 15 O, 17 O, 18 O, 18 F, 35 S, 36 Cl, 82 Br, 75 Br, 76 Br, 77 Br, 123 I, 124 I, 125 I and 131 I.
• the radionuclide that is incorporated in the instant radio-labeled compounds will depend on the specific application of that radio-labeled compound.
• radio-labeled or “labeled compound” is a compound that has incorporated at least one radionuclide.
• the radionuclide is selected from the group consisting of 3 H, 14 C, 125 I, 35 S and 82 Br.
• the present invention can further include synthetic methods for incorporating radio-isotopes into compounds of the invention. Synthetic methods for incorporating radio-isotopes into organic compounds are well known in the art, and an ordinary skill in the art will readily recognize the methods applicable for the compounds of invention.
• a labeled compound of the invention can be used in a screening assay to identify/evaluate compounds.
• a newly synthesized or identified compound (i.e., test compound) which is labeled can be evaluated for its ability to bind a JAK by monitoring its concentration variation when contacting with the JAK, through tracking of the labeling.
• a test compound (labeled) can be evaluated for its ability to reduce binding of another compound which is known to bind to a JAK (i.e., standard compound). Accordingly, the ability of a test compound to compete with the standard compound for binding to the JAK directly correlates to its binding affinity.
• the standard compound is labeled and test compounds are unlabeled. Accordingly, the concentration of the labeled standard compound is monitored in order to evaluate the competition between the standard compound and the test compound, and the relative binding affinity of the test compound is thus ascertained.
• Tables 1 to 4 below provide example compounds of the invention that show activity as JAK inhibitors according to one or more of the assays provided herein.
• C refers to silica
• N,N-diisopropylamine (20 mL, 0.14 mol) was dissolved in tetrahydrofuran (50 mL) and was cooled to ⁇ 78° C.
• tetrahydrofuran 50 mL
• n-butyllithium in hexanes 86 mL, 0.14 mol
• 2-fluoropyridine 10 mL, 0.1 mol
• the unreacted potassium permanganate and the precipitated MnO 2 were reduced to soluble Mn 2+ ions by adding a minimum quantity of NaNO 2 (0.14 g) and 10% H 2 SO 4 (1.4 mL) in small portions.
• the solution was transferred to a 250 mL separating funnel, saturated with NaCl, and extracted with ethyl acetate 2 ⁇ , dried over MgSO 4 , concentrated and was purified by column chromatography on silica gel. (20% ethyl acetate, 80% hexanes) to give 0.45 g of the desired product.
• N,N,N′,N′-tetramethylethylenediamine (8.0 mL, 0.053 mol) and N,N-diisopropylamine (7.4 mL, 0.053 mol) were mixed in tetrahydrofuran (43 mL) and then cooled to ⁇ 78° C.
• N,N-diethyl-2-[(4-methylpyridin-3-yl)amino]nicotinamide (5.00 g, 0.0176 mol) in tetrahydrofuran (100 mL) and then cooled to 0° C. under an atmosphere of nitrogen.
• the mixture from the first flask was added to the second flask and the resulting mixture stirred at 0° C. for 30 minutes.
• the reaction was quenched with (aq)NH 4 Cl and was extracted with ethyl acetate.
• hydroxyimidazole intermediate (0.5 g) from above was stirred in acetonitrile (10 mL) and triisopropylphosphite (1 mL) was then added. The mixture was heated to 170° C. in the microwave for 20 min. The yellow precipitate was filtered and washed with acetonitrile to give 0.4 g of the desired product (97% purity).
• N,N-Dimethylformamide (27 mL, 0.35 mol) was added slowly via syringe maintaining temperature below ⁇ 55° C. After ten minutes, the cooling bath was removed and the mixture slowly warmed to room temperature. The reaction was quenched with NH 4 Cl/H 2 O and then 4 M HCl to adjust the pH ⁇ 7. NaHCO 3 /H 2 O was then added to adjust the pH 9-10, and then extracted three times with Et 2 O. The combined extracts were washed with brine, dried over MgSO 4 , filtered and concentrated to a yellow oil.
• the reaction mixture was poured into a cold solution of saturated NaCl/water and HCl (2.0 mL, 12 M, 24 mmol) and stirred (pH ⁇ 13) and then extracted 3 ⁇ with ethyl acetate. The combined extracts were washed with brine, dried over Na 2 SO 4 , filtered, and concentrated. The crude product was adsorbed onto silica gel and then chromatographed on silica gel eluting with 10% methanol/CH 2 Cl 2 to give the desired product as a white solid (1.15 g, 89%).
• Dess-Martin periodinane (0.810 g, 1.91 mmol) was added to a solution of 6,11-dihydro-5H-dipyrido[2,3-b:3′,4′-f]azepin-5-ol (0.370 g, 1.74 mmol, Intermediate D-5) in dichloromethane (30 mL) under an atmosphere of nitrogen and stirred for 1 h. The yellow mixture was poured into a solution of sodium bisulfite in water and stirred for 5 minutes. The mixture was then diluted with dichloromethane and sodium bicarbonate was added to adjust the pH to 8-9. The mixture was extracted three times with dichloromethane and the combined extracts were dried over sodium sulfate, filtered, and concentrated.
• Step 1 4-bromo-5-methyl-1-(tetrahydro-2H-pyran-2-yl)-3-(trifluoromethyl)-1H-pyrazole
• Step 3 2-[5-methyl-1-(tetrahydro-2H-pyran-2-yl)-3-(trifluoromethyl)-1H-pyrazol-4-yl]-3,8-dihydroimidazo[4,5-d]dipyrido[2,3-b:4′,3′-f]azepine trifluoroacetate
• the combined organic phase was washed with water, then sat'd NaCl, dried over MgSO 4 and reduced to dryness in vacuo to give the crude product.
• the compound was purified by preparative LCMS to obtain the desired product as a TFA salt (1.45 g, 64%).
• Step 4 2-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-4-yl]-3,8-dihydroimidazo[4,5-d]dipyrido[2,3-b:4′,3′-f]azepine bis(trifluoroacetate)
• Step 5 2-[3-(difluoromethyl)-5-methyl-1-(tetrahydro-2H-pyran-2-yl)-1H-pyrazol-4-yl]imidazo[4,5-d]dipyrido[2,3-b:4′,3′-f]azepin-3(8H)-ol
• Step 6 2-[3-(difluoromethyl)-5-methyl-8-(tetrahydro-2H-pyran-2-yl)-1H-pyrazol-4-yl]-3,8-dihydroimidazo[4,5-d]dipyrido[2,3-b:4′,3′-f]azepine
• Step 7 2-[3-(difluoromethyl)-5-methyl-1H-pyrazol-4-yl]-3,8-dihydroimidazo[4,5-d]dipyrido[2,3-b:4′,3′-f]azepine
• the reaction was neutralized with NaHCO 3 and was extracted with ethyl acetate and the organic extracts were washed with water, saturated NaCl, dried (MgSO 4 ), concentrated in vacuo to a reduced volume and crystallized from MeOH/EtOAc to give the desired product (1.10 g). A portion of this (0.70 g) was suspended in methanol and 1.00 M of HCl in ether (6.00 mL) was added at which time the compound was completely dissolved. The reaction was concentrated in vacuo to reduce solvent to a minimal volume and ether was added. The crystallized solid was washed with ether and dried to give the bis hydrochloride salt (0.82 mg).
• Step 3 2-(2,6-dichloro-4-[(triisopropylsilyl)oxy]methylphenyl)imidazo[4,5-d]dipyrido[2,3-b:4′,3′-f]azepin-3(8H)-ol
• Step 5 2-(3,8-dihydroimidazo[4,5-d]dipyrido[2,3-b:4′,3′-f]azepin-2-yl)-5-(hydroxymethyl)-isophthlaonitrile bis(trifluoroacetate)
• Step 1 2-[2,6-dichloro-4-(chloromethyl)phenyl]-3,8-dihydroimidazo[4,5-d]dipyrido[2,3-b:4′,3′-f]azepine
• reaction mixture was diluted with methanol and purified by preparative LCMS to give the desired sulfoxide A-135 (27 mg, 38%) LC/MS: 456 (M+H) + and the desired sulfone A-136 (26 mg, 40%) LC/MS: 472 (M+H) + .
• Step 1 tert-butyl (4-formylpyridin-3-yl)carbamate
• Step 2 tert-butyl [4-(3-hydroxy-3,8-dihydroimidazo[4,5-d]dipyrido[2,3-b:4′,3′-f]azepin-2-yl)pyridin-3-yl]carbamate
• Step 2 2-(2,6-dichloro-4-methoxyphenyl)-3,8-dihydroimidazo[4,5-d]dipyrido[2,3-b:4′,3′-f]azepine bis(trifluoroacetate)
• Step 3 2-[2,6-dichloro-4-(trifluoromethoxy)phenyl]-3,8-dihydroimidazo[4,5-d]dipyrido[2,3-b:4′,3′-f]azepine bis(trifluoroacetate)
• Jak targets Compounds herein were tested for inhibitory activity of Jak targets according to the following in vitro assay described in Park et al., Analytical Biochemistry 1999, 269, 94-104.
• the catalytic domains of human Jak1 (a.a. 837-1142), Jak2 (a.a. 828-1132) and Jak3 (a.a. 781-1124) with an N-terminal His tag were expressed using baculovirus in insect cells and purified.
• the catalytic activity of JAK1, JAK2 or JAK3 was assayed by measuring the phosphorylation of a biotinylated peptide.
• the phosphorylated peptide was detected by homogenous time resolved fluorescence (HTRF).
• IC 50 s of compounds were measured for each kinase in the reactions that contain the enzyme, ATP and 500 nM peptide in 50 mM Tris (pH 7.8) buffer with 100 mM NaCl, 5 mM DTT, and 0.1 mg/mL (0.01%) BSA.
• the ATP concentration in the reactions was 90 ⁇ M for Jak1, 30 ⁇ M for Jak2 and 3 ⁇ M for Jak3.
• Reactions were carried out at room temperature for 1 hr and then stopped with 20 ⁇ L 45 mM EDTA, 300 nM SA-APC, 6 nM Eu-Py20 in assay buffer (Perkin Elmer, Boston, Mass.).
• Binding to the Europium labeled antibody took place for 40 minutes and HTRF signal was measured on a Fusion plate reader (Perkin Elmer, Boston, Mass.). Compounds having an IC 50 of 10 ⁇ M or less for any of the above-mentioned Jak targets were considered active.
• One or more compounds herein were tested for inhibitory activity of Jak targets according to at least one of the following cellular assays.
• Cancer cell lines dependent on cytokines and hence Jak/STAT signal transduction, for growth were plated at 6000 cells per well (96 well plate format) in RPMI 1640, 10% Free BaseS, and 1 nG/mL of appropriate cytokine. Compounds were added to the cells in DMSO/media (final concentration 0.2% DMSO) and incubated for 72 hours at 37° C., 5% CO 2 . The effect of compound on cell viability was assessed using the CellTiter-Glo Luminescent Cell Viability Assay (Promega) followed by TopCount (Perkin Elmer, Boston, Mass.) quantitation. Potential off-target effects of compounds were measured in parallel using a non-Jak driven cell line with the same assay readout. Compounds having an IC 50 of 10 ⁇ M or less with selectivity for Jak driven proliferation were considered active. All experiments were performed in duplicate.
• the above cell lines can also be used to examine the effects of compounds on phoshporylation of JAK kinases or potential downstream substrates such as STAT proteins, Akt, Shp2, or Erk. These experiments can be performed following an overnight cytokine starvation, followed by a brief preincubation with compound (2 hours or less) and cytokine stimulation of approximately 1 hour or less. Proteins are then extracted from cells and analyzed by techniques familiar to those schooled in the art including Western blotting or ELISAs using antibodies that can differentiate between phosphorylated and total protein. These experiments can utilize normal or cancer cells to investigate the activity of compounds on tumor cell survival biology or on mediators of inflammatory disease.
• JAK2V617F mutation found in myeloid proliferative disorders.
• These experiments often utilize cytokine dependent cells of hematological lineage (e.g. BaF/3) into which the wild-type or mutant JAK kinases are ectopically expressed (James, C., et al. Nature 434:1144-1148; Staerk, J., et al. JBC 280:41893-41899).
• Endpoints include the effects of compounds on cell survival, proliferation, and phosphorylated JAK, STAT, Akt, or Erk proteins.
• PBMCs Peripheral blood mononuclear cells
• Compounds herein can be evaluated in human tumor xenograft models in immune compromised mice.
• a tumorigenic variant of the INA-6 plasmacytoma cell line can be used to inoculate SCID mice subcutaneously (Burger, R., et al. Hematol J. 2:42-53, 2001).
• Tumor bearing animals can then be randomized into drug or vehicle treatment groups and different doses of compounds can be administered by any number of the usual routes including oral, i.p., or continuous infusion using implantable pumps. Tumor growth is followed over time using calipers.
• tumor samples can be harvested at any time after the initiation of treatment for analysis as described above (Example B) to evaluate compound effects on JAK activity and downstream signaling pathways.
• selectivity of the compound(s) can be assessed using xenograft tumor models that are driven by other know kinases (e.g. Bcr-Abl) such as the K562 tumor model.
• Bcr-Abl know kinases
• the murine skin contact delayed-type hypersensitivity (DTH) response is considered to be a valid model of clinical contact dermatitis, and other T-lymphocyte mediated immune disorders of the skin, such as psoriasis (Immunol Today. 1998 January; 19(1):37-44).
• Murine DTH shares multiple characteristics with psoriasis, including the immune infiltrate, the accompanying increase in inflammatory cytokines, and keratinocyte hyperproliferation.
• many classes of agents that are efficacious in treating psoriasis in the clinic are also effective inhibitors of the DTH response in mice (Agents Actions. 1993 January; 38(1-2):116-21).
• Treatment with the test compounds was given throughout the sensitization and challenge phases (day ⁇ 1 to day 7) or prior to and throughout the challenge phase (usually afternoon of day 4 to day 7). Treatment of the test compounds (in different concentration) was administered either systemically or topically (topical application of the treatment to the ears). Efficacies of the test compounds are indicated by a reduction in ear swelling comparing to the situation without the treatment. Compounds causing a reduction of 20% or more were considered efficacious. In some experiments, the mice are challenged but not sensitized (negative control).
• test compounds a clinically efficacious treatment for psoriasis
• dexamethasone a clinically efficacious treatment for psoriasis
• Test compounds and the dexamethasone can produce similar transcriptional changes both qualitatively and quantitatively, and both the test compounds and dexamethasone can reduce the number of infiltrating cells.
• Both systemically and topical administration of the test compounds can produce inhibitive effects, i.e., reduction in the number of infiltrating cells and inhibition of the transcriptional changes.
• rodent models of arthritis can be used to evaluate the therapeutic potential of compounds dosed preventatively or therapeutically. These models include but are not limited to mouse or rat collagen-induced arthritis, rat adjuvant-induced arthritis, and collagen antibody-induced arthritis.
• Autoimmune diseases including, but not limited to, multiple sclerosis, type I-diabetes mellitus, uveoretinitis, thyroditis, myasthenia gravis, immunoglobulin nephropathies, myocarditis, airway sensitization (asthma), lupus, or colitis may also be used to evaluate the therapeutic potential of compounds herein.
• These models are well established in the research community and are familiar to those schooled in the art (Current Protocols in Immnology, Vol 3., Coligan, J. E. et al, Wiley Press.; Methods in Molecular Biology: Vol. 225, Inflammation Protocols., Winyard, P. G. and Willoughby, D. A., Humana Press, 2003.).

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