CN105085680A - Humanized anti-PD-1 and c-MET bispecific antibody, and preparation method and application thereof - Google Patents
Humanized anti-PD-1 and c-MET bispecific antibody, and preparation method and application thereof Download PDFInfo
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Abstract
本发明属生物技术领域,具体涉及一种重组人源化抗PD-1及抗c-MET双特异性抗体及其制备方法和应用。本发明通过比对人源抗体库,计算机分子结构模拟、分子对接模拟及序列分析,设计重组人源化抗PD-1及抗c-MET双特异性抗体分子,包括亲和力成熟、结构优化、人源化及密码子优化,并在优化信号肽序列及质粒表达载体复制子的基础上,构建重组人源化抗PD-1及抗c-MET双特异性抗体的表达质粒。该双特异性抗体同时具备免疫原性低,制备过程简便、安全,产品得率、纯度、活性高等特性。可进一步制备治疗非小细胞肺癌的特效新药。The invention belongs to the field of biological technology, and specifically relates to a recombinant humanized anti-PD-1 and anti-c-MET bispecific antibody and its preparation method and application. The present invention designs recombinant humanized anti-PD-1 and anti-c-MET bispecific antibody molecules by comparing human antibody libraries, computer molecular structure simulation, molecular docking simulation and sequence analysis, including affinity maturation, structure optimization, human Humanization and codon optimization, and on the basis of optimizing the signal peptide sequence and plasmid expression vector replicon, the expression plasmid of recombinant humanized anti-PD-1 and anti-c-MET bispecific antibody was constructed. The bispecific antibody also has the characteristics of low immunogenicity, simple and safe preparation process, and high product yield, purity, and activity. A new specific drug for treating non-small cell lung cancer can be further prepared.
Description
技术领域technical field
本发明属生物技术领域,具体涉及一种人源化抗PD-1及c-MET双特异性抗体及其制备方法和应用。The invention belongs to the field of biological technology, and in particular relates to a humanized anti-PD-1 and c-MET bispecific antibody and its preparation method and application.
背景技术Background technique
现有技术公开了单克隆抗体已被广泛应用于肿瘤治疗。研究显示,传统的单克隆抗体主要通过招募具有Fcγ受体的免疫效应细胞、激活补体、诱导凋亡、抑制生长因子等机制杀伤肿瘤细胞;然而由于T细胞表面不具有Fcγ受体,所以传统的单克隆抗体无法招募T细胞用于治疗,因而限制了单克隆抗体的治疗效果。The prior art discloses that monoclonal antibodies have been widely used in tumor therapy. Studies have shown that traditional monoclonal antibodies kill tumor cells mainly by recruiting immune effector cells with Fcγ receptors, activating complement, inducing apoptosis, and inhibiting growth factors; however, because T cells do not have Fcγ receptors on the surface, traditional monoclonal antibodies Monoclonal antibodies cannot recruit T cells for treatment, thus limiting the therapeutic effect of monoclonal antibodies.
研究表明,T细胞在肿瘤治疗中具有很重要的作用,诱导动物模型中的T细胞反应可以引起肿瘤消退并抑制肿瘤复发。有研究报道将肿瘤诱导产生的特异性T细胞输回到黑色素瘤患者体内可以有效地防止肿瘤转移。细胞毒细胞T淋巴细胞(CTL)杀伤靶细胞主要经过两个阶段:效-靶细胞结合阶段和细胞裂解阶段,因此,能够桥接T细胞与肿瘤相关抗原(TAA)并介导靶向性细胞毒T淋巴细胞(rCTL)杀伤肿瘤细胞的双特异性抗体具有广阔应用前景。Studies have shown that T cells play an important role in tumor therapy, and inducing T cell responses in animal models can cause tumor regression and inhibit tumor recurrence. Some studies have reported that infusing tumor-induced specific T cells back into melanoma patients can effectively prevent tumor metastasis. Cytotoxic T lymphocytes (CTLs) kill target cells mainly through two stages: effector-target cell binding stage and cell lysis stage, therefore, can bridge T cells and tumor-associated antigens (TAA) and mediate targeted cytotoxicity Bispecific antibodies against tumor cells by T lymphocytes (rCTL) have broad application prospects.
T细胞的激活需要双重信号。第一信号(识别信号)来自TCR和抗原肽的结合;第二信号(激活信号)来自协同刺激受体与其配体的结合。其中协同刺激受体包括激活性受体(主要是CD28)和抑制性受体(包括CTLA-4、PD-1和BTLA等)两种。PD-1即程序性细胞死亡蛋白1(Programmedcelldeathprotein1),属于免疫球蛋白超家族成员,表达于活化的T细胞、B细胞、巨噬细胞,主要参与抑制活化T细胞的免疫应答。Activation of T cells requires a dual signal. The first signal (recognition signal) comes from the combination of TCR and antigenic peptide; the second signal (activation signal) comes from the combination of costimulatory receptor and its ligand. Among them, co-stimulatory receptors include activating receptors (mainly CD28) and inhibitory receptors (including CTLA-4, PD-1 and BTLA, etc.). PD-1, Programmed cell death protein 1, is a member of the immunoglobulin superfamily, expressed in activated T cells, B cells, and macrophages, and is mainly involved in suppressing the immune response of activated T cells.
抗肿瘤药物由于其靶点通常也表达于在正常组织中,容易引起正常组织的毒性反应,因而产生严重的毒副作用。c-MET即肝细胞生长因子受体(HGFR),由原癌基因c-Met编码,是一种受体酪氨酸激酶(RTK),在正常组织中几乎没有活性,但在多种肿瘤中通常处于异常激活状态。Antineoplastic drugs are usually expressed in normal tissues because their targets are usually expressed in normal tissues, which can easily cause toxic reactions in normal tissues, resulting in serious side effects. c-MET, the hepatocyte growth factor receptor (HGFR), encoded by the proto-oncogene c-Met, is a receptor tyrosine kinase (RTK), which has almost no activity in normal tissues, but in many tumors Usually abnormally active.
随着计算机科学的迅猛发展,近年来计算机辅助药物设计成为研究与开发新药的崭新技术,明显加快了新药设计的速度和效率。蛋白质结构的不断解析,PDB数据不断增长,为计算机辅助设计蛋白质药物成为可能。基于蛋白质空间结构的蛋白质药物研究倍受重视。With the rapid development of computer science, computer-aided drug design has become a brand-new technology for research and development of new drugs in recent years, which has significantly accelerated the speed and efficiency of new drug design. The continuous analysis of protein structure and the continuous growth of PDB data make it possible for computer-aided design of protein drugs. Research on protein drugs based on protein spatial structure has attracted much attention.
发明内容Contents of the invention
本发明的目的是提供通过合理选择靶点,筛选、改造、设计、表达并纯化靶向PD-1与c-MET的双特异性人源化抗体及其制备方法。The purpose of the present invention is to provide screening, modification, design, expression and purification of bispecific humanized antibodies targeting PD-1 and c-MET and their preparation methods through rational selection of targets.
本发明的另一目的是提供所述双特异性抗体在制备治疗非小细胞肺癌药物中的应用。Another object of the present invention is to provide the application of the bispecific antibody in the preparation of drugs for the treatment of non-small cell lung cancer.
本发明通过比对人源抗体库,计算机分子结构模拟、分子对接模拟及序列分析,设计重组人源化抗PD-1及抗c-MET双特异性抗体分子,包括亲和力成熟、结构优化、人源化及密码子优化,并在优化信号肽序列及质粒表达载体复制子的基础上,构建重组人源化抗PD-1及抗c-MET双特异性抗体的表达质粒。The present invention designs recombinant humanized anti-PD-1 and anti-c-MET bispecific antibody molecules by comparing human antibody libraries, computer molecular structure simulation, molecular docking simulation and sequence analysis, including affinity maturation, structure optimization, human Humanization and codon optimization, and on the basis of optimizing the signal peptide sequence and plasmid expression vector replicon, the expression plasmid of recombinant humanized anti-PD-1 and anti-c-MET bispecific antibody was constructed.
更具体的,本发明通过通过比对人源抗体库和计算机分子模拟软件DiscoveryStudio对筛选噬菌体文库得到的抗体序列进行改造,在保持其特异性的同时进行亲和力成熟及人源化改造。通过缺失完整抗体中的某些结构域(如CL、CH1等)设计两种不同的抗体形式(FullAntibody,SMIPAntibody),利用不同长度的连接短肽片段Gly4Ser连接同一特异性的轻链与重链。同时结合计算机分子模拟结果,利用定点突变技术对其Fc区进行改造,应用“KnobsintoHoles”技术使具有不同靶向特异性的两条抗体链能够相互作用形成异源二聚体。More specifically, the present invention transforms the antibody sequence obtained by screening the phage library by comparing the human antibody library with the computer molecular simulation software DiscoveryStudio, and performs affinity maturation and humanization while maintaining its specificity. Two different antibody formats (FullAntibody, SMIPAntibody) are designed by deleting certain domains in the complete antibody (such as CL, CH1, etc.), and the light chain and heavy chain of the same specificity are connected by connecting short peptide fragments Gly4Ser of different lengths. At the same time, combined with the results of computer molecular simulation, the site-directed mutagenesis technology was used to modify its Fc region, and the "KnobsintoHoles" technology was applied to enable two antibody chains with different targeting specificities to interact to form heterodimers.
本发明的技术方案通过下述方法和步骤进行:Technical scheme of the present invention carries out by following method and step:
1)计算机辅助设计人源化抗PD-1及c-MET双特异性抗体;1) Computer-aided design of humanized anti-PD-1 and c-MET bispecific antibodies;
2)双特异性抗体轻链与重链之间连接肽的选择及Fc区的改造,2) Selection of connecting peptide between the light chain and the heavy chain of the bispecific antibody and the modification of the Fc region,
利用不同长度的连接短肽片段Gly4Ser连接同一特异性的轻链与重链;同时结合计算机分子模拟结果,利用定点突变技术对其Fc区进行改造,应用“KnobsintoHoles”技术使具有不同靶向特异性的两条抗体链能够相互作用形成异源二聚体;The light chain and heavy chain of the same specificity are connected by connecting short peptide fragments Gly4Ser of different lengths; combined with the results of computer molecular simulation, the Fc region is modified by site-directed mutagenesis technology, and the "KnobsintoHoles" technology is used to make it have different target specificities The two antibody chains are capable of interacting to form a heterodimer;
3)人源化抗PD-1及c-MET双特异性抗体的哺乳动物细胞表达表达,3) Mammalian cell expression of humanized anti-PD-1 and c-MET bispecific antibody,
本发明所述的人源化抗PD-1及c-MET双特异性抗体不限于特定的表达系统,包括真核表达系统与原核表达系统;The humanized anti-PD-1 and c-MET bispecific antibody described in the present invention is not limited to a specific expression system, including eukaryotic expression system and prokaryotic expression system;
4)人源化抗PD-1及c-MET双特异性抗体的纯化4) Purification of humanized anti-PD-1 and c-MET bispecific antibody
细胞培养上清,上rProteinA亲和层析柱,经0.02MPB(pH7.0)缓冲液平衡,然后用0.1MGlycine-HCl(pH3.0)缓冲液洗脱,收集洗脱峰。冷冻干燥rProteinA亲和层析洗脱峰收集液,冻干粉于低温保存待用;Cell culture supernatant was applied to rProteinA affinity chromatography column, equilibrated with 0.02MPB (pH7.0) buffer, then eluted with 0.1MGlycine-HCl (pH3.0) buffer, and the eluted peaks were collected. Freeze-dry the rProteinA affinity chromatography elution peak collection solution, and store the freeze-dried powder at low temperature for later use;
5)人源化抗PD-1及c-MET双特异性抗体活性测定。5) Activity determination of humanized anti-PD-1 and c-MET bispecific antibody.
本发明中,进行了人源化抗PD-1及c-MET双特异性抗体的测定实验,包括,1)特异性及亲和力分析测定;2)刺激T细胞增殖及细胞因子分泌;3)体外抑制肿瘤细胞增殖实验;4)体内抑制成瘤实验;以及5)药效学实验;实验结果表明,本发明的人源化抗PD-1及c-MET双特异性抗体同时具备免疫原性低,且制备过程简便、安全,产品得率、纯度、活性高等特性。可进一步制备治疗非小细胞肺癌的特效新药。In the present invention, the determination experiments of humanized anti-PD-1 and c-MET bispecific antibodies were carried out, including: 1) specificity and affinity analysis and determination; 2) stimulation of T cell proliferation and cytokine secretion; 3) in vitro Inhibition of tumor cell proliferation experiment; 4) in vivo tumor inhibition experiment; and 5) pharmacodynamics experiment; the experimental results show that the humanized anti-PD-1 and c-MET bispecific antibody of the present invention also has low immunogenicity , and the preparation process is simple and safe, and the product has the characteristics of high yield, purity and activity. A new specific drug for treating non-small cell lung cancer can be further prepared.
附图说明Description of drawings
图1,是FullAntibody瞬时表达的SDS-PAGE电泳鉴定。Figure 1 is the SDS-PAGE electrophoresis identification of the transient expression of FullAntibody.
图2,是FullAntibody纯化的SDS-PAGE电泳鉴定。Figure 2 is the SDS-PAGE electrophoresis identification of the purification of FullAntibody.
图3,是SMIPAntibody瞬时表达的SDS-PAGE电泳鉴定。Figure 3 is the SDS-PAGE electrophoresis identification of transient expression of SMIPAntibody.
图4,是SMIPAntibody纯化的SDS-PAGE电泳鉴定。Figure 4 is the SDS-PAGE electrophoresis identification of SMIPAntibody purification.
图5,是FullAntibody特异性的流式检测。Figure 5 is the flow cytometric detection of FullAntibody specificity.
图6,是SMIPAntibody特异性的流式检测。Figure 6 is the flow cytometric detection of SMIPAntibody specificity.
图7,是FullAntibody与SMIPAntibody抑制肿瘤细胞c-MET下游信号转导通路激活的WesternBlot分析。Figure 7 is a Western Blot analysis of the inhibition of c-MET downstream signal transduction pathway activation in tumor cells by FullAntibody and SMIPAntibody.
具体实施方式Detailed ways
实施例1Example 1
1)人源化抗PD-1及抗c-MET双特异性抗体序列设计及表达质粒构建1) Sequence design of humanized anti-PD-1 and anti-c-MET bispecific antibody and construction of expression plasmid
通过比对人源抗体库,计算机分子结构模拟、分子对接模拟及序列分析,设计重组人源化抗PD-1及抗c-MET双特异性抗体分子(包括亲和力成熟、结构优化、人源化及密码子优化),并在优化信号肽序列及质粒表达载体复制子的基础上,构建重组人源化抗PD-1及抗c-MET双特异性抗体的表达质粒;By comparing human antibody libraries, computer molecular structure simulation, molecular docking simulation and sequence analysis, design recombinant humanized anti-PD-1 and anti-c-MET bispecific antibody molecules (including affinity maturation, structure optimization, humanization) and codon optimization), and on the basis of optimizing the signal peptide sequence and plasmid expression vector replicon, construct the expression plasmid of recombinant humanized anti-PD-1 and anti-c-MET bispecific antibody;
2)人源化抗PD-1及c-MET双特异性抗体的表达2) Expression of humanized anti-PD-1 and c-MET bispecific antibody
驯化293E及CHO细胞使其适应无血清悬浮培养;Acclimate 293E and CHO cells to adapt to serum-free suspension culture;
重组人源化抗PD-1及抗c-MET双特异性抗体表达质粒瞬时转染293E细胞,并优化蛋白的表达与纯化条件,主要包括转染条件(转染时的细胞密度、转染质粒所使用的量及其与转染试剂PEI的比例等)、培养条件(培养基的优化、转速的选择等)的优化及纯化过程中参数的选择,同时构建CHO细胞稳转株,筛选获得高表达克隆;Recombinant humanized anti-PD-1 and anti-c-MET bispecific antibody expression plasmids were transiently transfected into 293E cells, and protein expression and purification conditions were optimized, mainly including transfection conditions (cell density during transfection, transfection plasmid The amount used and its ratio to the transfection reagent PEI, etc.), the optimization of culture conditions (optimization of medium, selection of rotation speed, etc.) and the selection of parameters in the purification process, while constructing CHO cell stable transfection strains, screening to obtain high expression cloning;
3)人源化抗PD-1及c-MET双特异性抗体的纯化3) Purification of humanized anti-PD-1 and c-MET bispecific antibody
细胞培养上清,上rProteinA亲和层析柱,经0.02MPB(pH7.0)缓冲液平衡,然后用0.1MGlycine-HCl(pH3.0)缓冲液洗脱,收集洗脱峰。冷冻干燥rProteinA亲和层析洗脱峰收集液,冻干粉于低温保存待用。Cell culture supernatant was applied to rProteinA affinity chromatography column, equilibrated with 0.02MPB (pH7.0) buffer, then eluted with 0.1MGlycine-HCl (pH3.0) buffer, and the eluted peaks were collected. Freeze-dry the rProteinA affinity chromatography elution peak collection solution, and store the freeze-dried powder at low temperature until use.
实施例2Example 2
人源化抗PD-1及c-MET双特异性抗体的测定Determination of humanized anti-PD-1 and c-MET bispecific antibody
1)特异性及亲和力分析测定1) Specificity and affinity analysis and determination
使用生物大分子相互作用分析仪(Biacore、ITC等)实时跟踪重组人源化抗PD-1及抗c-MET双特异性抗体与靶受体胞外段之间的相互作用,分析其结合特异性、亲和力及动力学特性;Use biomacromolecule interaction analyzers (Biacore, ITC, etc.) to track the interaction between recombinant humanized anti-PD-1 and anti-c-MET bispecific antibodies and the extracellular domain of target receptors in real time, and analyze their binding specificity Sex, affinity and kinetic properties;
通过流式细胞术分析重组人源化抗PD-1及抗c-MET双特异性抗体与活细胞表面的靶受体(PD-1、c-MET)结合的亲和力及特异性;The binding affinity and specificity of recombinant humanized anti-PD-1 and anti-c-MET bispecific antibodies to target receptors (PD-1, c-MET) on the surface of living cells were analyzed by flow cytometry;
2)刺激T细胞增殖及细胞因子分泌2) Stimulate T cell proliferation and cytokine secretion
全血培养人外周血,加入重组人源化抗PD-1及抗c-MET双特异性抗体预处理,随后用白细胞凝集素(Leucoagglutinin,PHA-L)刺激,评价重组人源化抗PD-1及抗c-MET双特异性抗体增强PHA-L所刺激的T细胞增殖及细胞因子(IL-2,IFN-γ)分泌的能力;Human peripheral blood was cultured from whole blood, pretreated with recombinant humanized anti-PD-1 and anti-c-MET bispecific antibodies, and then stimulated with leucoagglutinin (PHA-L) to evaluate recombinant humanized anti-PD-1 1 and the ability of anti-c-MET bispecific antibody to enhance the proliferation of T cells stimulated by PHA-L and the secretion of cytokines (IL-2, IFN-γ);
3)体外抑制肿瘤细胞增殖实验3) In vitro inhibition of tumor cell proliferation experiment
体外扩增培养细胞表面表达c-MET的肿瘤细胞株(如MKN45、MDA-MB-231、A549等),加入重组人源化抗PD-1及抗c-MET双特异性抗体预处理,随后用肝细胞生长因子(Hepatocytegrowthfactor,HGF)刺激,评价重组人源化抗PD-1及抗c-MET双特异性抗体拮抗HGF刺激的肿瘤细胞生长、侵袭等相关信号通路的功能,如AKT、ERK1/2、STAT3等的改变及增殖与侵袭能力的改变;In vitro expansion and culture of tumor cell lines expressing c-MET on the cell surface (such as MKN45, MDA-MB-231, A549, etc.), adding recombinant humanized anti-PD-1 and anti-c-MET bispecific antibodies for pretreatment, and then Stimulate with hepatocyte growth factor (HGF), and evaluate the functions of recombinant humanized anti-PD-1 and anti-c-MET bispecific antibodies to antagonize HGF-stimulated tumor cell growth, invasion and other related signaling pathways, such as AKT and ERK1 /2. Changes in STAT3, etc. and changes in proliferation and invasion capabilities;
4)体内抑制成瘤实验4) In vivo tumor inhibition experiment
移植人PBMC的SCID小鼠皮下种植肿瘤细胞后,注射重组人源化抗PD-1及抗c-MET双特异性抗体,评估重组人源化抗PD-1及抗c-MET双特异性抗体抑制成瘤的能力;SCID mice transplanted with human PBMC were subcutaneously implanted with tumor cells, injected with recombinant humanized anti-PD-1 and anti-c-MET bispecific antibodies, and evaluated recombinant humanized anti-PD-1 and anti-c-MET bispecific antibodies ability to inhibit tumorigenesis;
5)药效学实验5) Pharmacodynamic experiment
采用重组人源化抗PD-1及抗c-MET双特异性抗体进行实验动物非小细胞肺癌模型实验,并对有效剂量、量效与时效关系和毒副作用进行了评价;结果表明,所述的重组人源化抗PD-1及抗c-MET双特异性抗体能明显抑制非小细胞肺癌细胞的生长,且具有较明显的量效与时效关系,毒副作用小;可进一步制备治疗非小细胞肺癌非小细胞肺癌的药物。The recombinant humanized anti-PD-1 and anti-c-MET bispecific antibody was used to carry out the non-small cell lung cancer model experiment in experimental animals, and the effective dose, dose-effect and time-effect relationship and toxic and side effects were evaluated; the results showed that the The recombinant humanized anti-PD-1 and anti-c-MET bispecific antibody can significantly inhibit the growth of non-small cell lung cancer cells, and has a more obvious dose-effect and time-effect relationship, with little side effects; it can be further prepared to treat non-small cell lung cancer Drugs for non-small cell lung cancer.
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