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  1. Article
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    Author Correction: A roadmap for equitable reuse of public microbiome data

    Laura A. Hug, Roland Hatzenpichler, ... Alexander J. Probst in Nature Microbiology
    05 November 2025
  2. Article
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    Visualization of liquid-liquid phase transitions using a tiny G-quadruplex binding protein

    Liquid-liquid phase transitions govern a wide range of protein-protein and protein-RNA interactions. Although the importance of multivalency and...

    Bikash R. Sahoo, Xiexiong Deng, ... James C. A. Bardwell in Nature Communications
    29 September 2025 Open access
  3. Article
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    A roadmap for equitable reuse of public microbiome data

    Science benefits from rapid open data sharing, but current guidelines for data reuse were established two decades ago, when databases were several...

    Laura A. Hug, Roland Hatzenpichler, ... Alexander J. Probst in Nature Microbiology
    26 September 2025
  4. Article
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    Neutrino interaction vertex reconstruction in DUNE with Pandora deep learning

    The Pandora Software Development Kit and algorithm libraries perform reconstruction of neutrino interactions in liquid argon time projection chamber...

    A. Abed Abud, R. Acciarri, ... R. Zwaska in The European Physical Journal C
    25 June 2025 Open access
  5. Article
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    Annotation of protein-coding genes in 49 diatom genomes from the Bacillariophyta clade

    Diatoms, a major group of microalgae, play a critical role in global carbon cycling and primary production. Despite their ecological significance,...

    Natalia Nenasheva, Clara Pitzschel, ... Katharina J. Hoff in Scientific Data
    11 June 2025 Open access
  6. Protocol

    Navigating Eukaryotic Genome Annotation Pipelines: A Route Map to Using BRAKER, Galba, and TSEBRA

    Annotating the structure of protein-coding genes represents a major challenge in the analysis of eukaryotic genomes. This task sets the groundwork...
    Tomáš Brůna, Lars Gabriel, Katharina J. Hoff in Insect Genomics
    2025
  7. Article
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    Maximal oxygen uptake, pulmonary function and walking economy are not impaired in patients diagnosed with long COVID

    Introduction

    SARS-CoV-2 may result in the development of new symptoms, known as long COVID, a few months after the original infection.

    ...
    O. K. Berg, N. Aagård, ... E. Wang in European Journal of Applied Physiology
    29 November 2024 Open access
  8. Article
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    Two novel genomes of fireflies with different degrees of sexual dimorphism reveal insights into sex-biased gene expression and dosage compensation

    Sexual dimorphism arises because of divergent fitness optima between the sexes. Phenotypic divergence between sexes can range from mild to extreme....

    Ana Catalán, Daniel Gygax, ... Pablo Duchen in Communications Biology
    27 July 2024 Open access
  9. Article
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    Reduced interleukin-18 secretion by human monocytic cells in response to infections with hyper-virulent Streptococcus pyogenes

    Background

    Streptococcus pyogenes(group A streptococcus, GAS) causes a variety of diseases ranging from mild superficial infections of the throat...

    Lea A. Tölken, Antje D. Paulikat, ... Nikolai Siemens in Journal of Biomedical Science
    27 February 2024 Open access
  10. Article
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    Galba: genome annotation with miniprot and AUGUSTUS

    Background

    The Earth Biogenome Project has rapidly increased the number of available eukaryotic genomes, but most released genomes continue to lack...

    Tomáš Brůna, Heng Li, ... Katharina J. Hoff in BMC Bioinformatics
    31 August 2023 Open access
  11. Article
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    Reconstruction of interactions in the ProtoDUNE-SP detector with Pandora

    The Pandora Software Development Kit and algorithm libraries provide pattern-recognition logic essential to the reconstruction of particle...

    A. Abed Abud, B. Abi, ... R. Zwaska in The European Physical Journal C
    14 July 2023 Open access
  12. Article
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    Neutrophil-derived reactive agents induce a transient SpeB negative phenotype in Streptococcus pyogenes

    Background

    Streptococcus pyogenes(group A streptococci; GAS) is the main causative pathogen of monomicrobial necrotizing soft tissue infections...

    Patience Shumba, Thomas Sura, ... Nikolai Siemens in Journal of Biomedical Science
    10 July 2023 Open access
  13. Article
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    Genomic analysis of the international high-risk clonal lineage Klebsiella pneumoniae sequence type 395

    Background

    Klebsiella pneumoniae, which is frequently associated with hospital- and community-acquired infections, contains multidrug-resistant...

    Elvira R. Shaidullina, Michael Schwabe, ... Mikhail V. Edelstein in Genome Medicine
    13 February 2023 Open access
  14. Article
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    A geometrical approach to nontrivial topology via exotic spinors

    Exotic spinors arise in non-simply connected base manifolds due to the nonequivalent spinor structure. The dynamics of exotic spinors are endowed...

    J. M. Hoff da Silva, R. T. Cavalcanti, ... G. M. Caires da Rocha in Journal of High Energy Physics
    06 February 2023 Open access
  15. Article
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    Separation of track- and shower-like energy deposits in ProtoDUNE-SP using a convolutional neural network

    Liquid argon time projection chamber detector technology provides high spatial and calorimetric resolutions on the charged particles traversing...

    A. Abed Abud, B. Abi, ... R. Zwaska in The European Physical Journal C
    12 October 2022 Open access
  16. Article
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    Scintillation light detection in the 6-m drift-length ProtoDUNE Dual Phase liquid argon TPC

    DUNE is a dual-site experiment for long-baseline neutrino oscillation studies, neutrino astrophysics and nucleon decay searches. ProtoDUNE Dual Phase...

    A. Abed Abud, B. Abi, ... R. Zwaska in The European Physical Journal C
    16 July 2022 Open access
  17. Article
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    TSEBRA: transcript selector for BRAKER

    Background

    BRAKER is a suite of automatic pipelines, BRAKER1 and BRAKER2, for the accurate annotation of protein-coding genes in eukaryotic genomes....

    Lars Gabriel, Katharina J. Hoff, ... Mario Stanke in BMC Bioinformatics
    25 November 2021 Open access
  18. Article
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    The cumulation of ill health and low agency in socially excluded city dwellers in the Netherlands: how to better identify high-risk/high-need population segments with public health survey data

    Background

    Population segmentation and risk stratification are important strategies for allocating resources in public health, health care and social...

    Addi P. L. van Bergen, Annelies van Loon, ... Albert M. van Hemert in International Journal for Equity in Health
    19 July 2021 Open access
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