+
Skip to content
@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

Pinned Loading

  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 72 35

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 138 32

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 9

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 33 14

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 10

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    JavaScript 8 7

Repositories

Showing 10 of 109 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 3 4 5 0 Updated Jul 14, 2025
  • bugphyzzExports Public
    waldronlab/bugphyzzExports’s past year of commit activity
    R 1 1 3 0 Updated Jul 13, 2025
  • AppStatBio Public

    Applied Statistics for High-Throughput Biology

    waldronlab/AppStatBio’s past year of commit activity
    16 MIT 17 0 0 Updated Jul 11, 2025
  • bugSigSimple Public

    Simple exploratory analysis of curated microbe signatures

    waldronlab/bugSigSimple’s past year of commit activity
    R 4 15 6 (1 issue needs help) 0 Updated Jul 10, 2025
  • TCGAutils Public

    Toolbox package for organizing and working with TCGA data

    waldronlab/TCGAutils’s past year of commit activity
    R 28 7 1 0 Updated Jul 10, 2025
  • OmicsMLRepoData Public

    Translate Bioconductor resources into AI/ML-ready format + Manual curation/harmonization of the metadata for improved usability

    waldronlab/OmicsMLRepoData’s past year of commit activity
    R 3 0 5 (2 issues need help) 1 Updated Jul 10, 2025
  • BugSigDB Public

    A microbial signatures database

    waldronlab/BugSigDB’s past year of commit activity
    JavaScript 8 7 15 2 Updated Jul 9, 2025
  • curatedMetagenomicDataCuration Public

    Sample Metadata Curation for curatedMetagenomicData

    waldronlab/curatedMetagenomicDataCuration’s past year of commit activity
    R 29 23 21 (1 issue needs help) 1 Updated Jul 8, 2025
  • PublicMicrobiomeProject Public

    Tracking for project R01ca230551: Exploiting Public Metagenomic Data to Uncover Cancer-Microbiome Relationships

    waldronlab/PublicMicrobiomeProject’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Jul 6, 2025
  • XeniumIO Public

    software for importing 10X Xenium data

    waldronlab/XeniumIO’s past year of commit activity
    R 0 0 0 0 Updated Jul 3, 2025
View all repositories
点击 这是indexloc提供的php浏览器服务，不要输入任何密码和下载