Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)
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Oct 6, 2020
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prokka
Here are 11 public repositories matching this topic...
Prokka批量执行脚本 Batch Prokka can help you execute prokka batch assemblies.
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Nov 23, 2022 - Go
Plasmidome analysis to track the transfer route of AMR genes in bacteria
fasta-sequences rgi antimicrobial-resistance-genes prokka plasmidfinder abricate virulence-genes antimicrobial-genes-annotation amr-detection refseq-genbank panaroo
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Oct 15, 2023 - Jupyter Notebook
Analyzing the genomic and metagenomic features of SGB748 MAGs from oral samples to uncover their role in health and peri-implant diseases through patient metadata integration.
shell bash bioinformatics microbial-genomics metagenomic-analysis phylogenetic-analysis roary prokka genomic-analysis checkm oral-microbiome metadata-integration dental-plaque peri-implantitis sgb-mags phylophlan fast-tree
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Jul 13, 2025 - Jupyter Notebook
🦇🧫📊Study on bat gut shotgun metagenomics
phylogenetics beta-diversity microbial-communities blast spades differential-abundance-analyses fastq-files refseq alpha-diversity prokka quast kraken2 abricate lab-journal maaslin2 shotgun-metagenomics fastani humann3 virsorter2
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Jun 21, 2025 - Jupyter Notebook
🧬 Modular de novo genome assembly & annotation pipeline for Jupyter/Colab. User-friendly bioinformatics workflow with interactive visualizations, multiple tool options, and comprehensive reporting. Perfect for researchers, students, and bioinformaticians.
visualization python modular bioinformatics pipeline annotation genomics jupyter-notebook metagenomics educational comparative-genomics spades genome-assembly google-colab prokka
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Jul 12, 2025
[a.a. 23/24] M. Gambardella
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Mar 13, 2024
XSLT file to transform a UniProt proteome XML file to a protein fasta file for Prokka
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Jan 18, 2020 - XSLT
This project is part of the course of Computational Microbial Genomics, held by Nicola Segata (A.Y. 2021-2022) @ University of Trento.
genome-annotation microbial-genomics contigs taxonomic-classification pangenome phylogenetic-analysis roary prokka mags fasttree itol
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Apr 26, 2022 - TeX
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