Tool for converting mass spectrometry data to the imzML format.
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Jan 21, 2022 - Java
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imzml
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A tool for mass spectrometry data analysis.
bioinformatics metabolomics mass-spectrometry lc-ms ms-data imaging peptide-identification peptides mzml image-fusion desi-msi imzml de-novo dereplication mass-spectrometry-imaging bioinformatics-tool maldi-msi
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Aug 21, 2023 - C++
A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.
bioinformatics scientific-computing mass-spectrometry msi bruker data-conversion imzml omics-data-integration mass-spectrometry-imaging zarr spatialdata spatial-omics
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Oct 20, 2025 - Python
This framework allows to perform scRNA-seq-like analyses of imaging mass-spectrometry data. Check out the example jupyter-notebook in examples/
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Jun 22, 2025 - Jupyter Notebook
R package to convert raman data in .txt format exported from WiRe 5.2(Renishaw) and FIVE 5.1(WiTec) into the imzML data format.
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Sep 1, 2020 - C++
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