A Makefile for LaTeX - drop it in, type make, and magic happens.

A beautiful, simple, clean, and responsive Jekyll theme for academics

Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning

A tool for 2D protein visualization aimed at improving the comparability of protein structures through standardized 2D visualizations.

CROBOTS is a programming game, for programmers (or aspiring programmers.)

This is a demo for SOTA vocal separation models. Upload an audio file and the model will separate the vocals from the background music. Based on the result of MDX23, the current SOTA model is BS-Ro…

A command-line interface and Python library for generating AlphaFold3 input files.

Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

real time face swap and one-click video deepfake with only a single image

Kincore-Standalone2 - Python3 code for calculating the conformational state of typical protein kinases

Sugarizer is a web implementation of the Sugar platform to run on any device or browser

🌐 Make websites accessible for AI agents. Automate tasks online with ease.

PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods

Molecular dynamics simulations with an LLM agent

Automatable GenAI Scripting

Comprehensive library for fast, GPU accelerated molecular gridding for deep learning workflows

Development version of plumed 2

Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

Chromium running inside your terminal

User friendly and accurate binder design pipeline

A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations (oriented towards molecular dynamics (MD)), providing some t…

Zotero plugin to automatically move attachments and link them

Minimal AlphaFold