Tags: talmolab/sleap-roots
Tags
Implement older monocot pipeline (#54) * Fix docstring and `get_network_distribution_ratio` arguments * Add `join_pts` and `get_count` functions * Refactor `get_network_distribution` * Generalize functions for concatenating and joining points * Refactor scanline function * Make `OlderMonocotPipeline` * Refactor tests and fix arguments * Refactor `get_network_length` to take arbitrary number of lengths * Refactor `get_all_pts_array` to simplify * Refactor `Series` class to take a arbitrary number of labels * Add 10 DO rice fixture * Test refactored functions * Add 10 DO rice fixture * Add test for `OlderMonocot_pipeline` * Modify `get_grav_index` to take float and array inputs * Fix docstring in `Series` class * Test `OlderMonocotPipeline` and `get_grav_index` * Lint * Add folder of 10 do rice test data and test with `find_all_series` * Refactor series class and related functions to include crown labels * Refactor tests and fixtures * Get rid of uncessary monocots flag * Refactor tips and bases * Refactor tips and bases tests * Merge main with `older_monocot_pipeline` branch * Add standalone get root angle function * Fix typing * Add checks to convex hull function * Get rid of obsolete function * Fix network distribution * Add points related functions * Rename test data * Test new angle functions * Test new convex hull functions * Test new points functions * Rename test data * Fix tests * Match shapes * Update trait pipelines * Test trait pipelines * Test trait pipelines * Update version * Resolve conflicts * Resolve conflicts * resolve * Fix tips and bases and tests * Remove notebooks * Reformat * Lint
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