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Description
This is more of a formatting change request than an issue. I wanted to use some information in the Analysis tab, but this information is presented differently from the other tabs. That made selecting/filtering for what I wanted more involved, because I kept losing samples and had to figure out why.
Instead of having each entry in Analysis as a column, it's all as rows under 2 columns (analysis.Title
, analysis.Result
). Is it necessary that the information is presented this way instead of making each entry an individual column?
The way it is currently means that if a sequenced library isn't run through this analysis, it won't have an entry, not even an place-holder NA, so when I filtered for "Initial reads", a bunch of samples I wanted to include were lost from my table (yes, these were blanks. Absolutely I still need them).
I did realize the entries under analysis.Title
are not consistent, which is coming from Pandora itself, which is a problem. For example, GRG003.B0101.SG1.1.Human_Shotgun
has:
Initial reads (forward+reverse):
Failed reads (fwd+rev):
Failed reads (fwd+rev) in %:
Merged reads: Merged reads in %:
Mapped reads (fwd+rev+merged):
Mapped reads (fwd+rev+merged) in %:
Mapped fragments:
Mapped fragments in %:
Mapped fragments (L>=30):
Mapped fragments (L>=30) in %:
while GRG004.A0101.SG1.1.Human_Shotgun
has:
Initial reads:
Failed reads:
Failed reads in %:
Mapped reads/fragments:
Mapped reads/fragments in %:
Mapped reads/fragments (L>=30):
Mapped reads/fragments (L>=30) in %:
Is that difference b/c the human shotgun screening pipeline changed? Can it be normalized across Pandora, so that you can make the entries columns like for the other tabs?