Stars
A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantlab.org/bio3d
This R package computes mutation densities in a tumor's MRCA and associates the density with clinical risk. It is based on Körber et al., Neuroblastoma arises in early fetal development and its evo…
An R package implementing the UMAP dimensionality reduction method.
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.
A free and open-source DNA Sequencing/Visualization software for bioinformatics research.
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current …
R package for Pathway RespOnsive GENe activity inference
Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"
An efficient CLI to extract sequences from the SRA
A high efficiency binary format for sequencing data
R package to infer biological activities from omics data using a collection of methods.
MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation