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@secrierlab

Secrier Lab @ UCL Genetics Institute

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  1. HistoMIL HistoMIL Public

    A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.

    Python 30 8

  2. SpottedPy SpottedPy Public

    Hotspot cluster distance analysis in spatial transcriptomic data

    Jupyter Notebook 28

  3. EMT EMT Public

    This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.

    R 12 2

  4. tumourMassDormancy tumourMassDormancy Public

    This repository contains the code developed for the analysis of tumour mass dormancy, immunological and angiogenic dormancy across cancers from the Cancer Genome Atlas (TCGA).

    R 5 1

  5. EnrichMap EnrichMap Public

    EnrichMap: Spatially-informed enrichment analysis for functional interpretation of spatial transcriptomics.

    Python 5 1

  6. CancerG0Arrest CancerG0Arrest Public

    Evaluation of cell cycle arrest from transcriptomics data.

    R 4 1

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