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1. hgt_inference_comparative_study hgt_inference_comparative_study Public

   Relative benchmarking of HGT Inference models in the absence of ground-truth. Mirror of my Gitlab repo at CS@HHU

   Jupyter Notebook

2. hgt_rates_and_ecosystem_transfers hgt_rates_and_ecosystem_transfers Public

   Streamlined genomes, not horizontal gene transfer, mark bacterial transitions to unfamiliar environments. Analysis repo reconstructing ecosystem gain with metagenomics data. Mirror of my Gitlab rep…

   Jupyter Notebook

3. scanpy scanpy Public

   Forked from scverse/scanpy

   Single-cell analysis in Python. Scales to >100M cells.

   Python

4. scipy scipy Public

   Forked from scipy/scipy

   SciPy library main repository

   Python

5. delphim delphim Public

   Deep learning architecture prototype for microbiome multi-omics analysis that is aware of host immune markers as well as phylogenetics.

   Jupyter Notebook

6. imli imli Public

   Mirror of my Gitlab repo at CS@HHU

   Jupyter Notebook