Oxford Nanopore's Basecaller

Genome modeling and design across all domains of life

A curated list of awesome nanopore analysis tools.

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

To use Evo2 easily

Variant calling tool for long-read sequencing data

Copy number caller for long read data including SNV utilization

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A bioinformatics tool for working with modified bases

fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector

Annotation and Ranking of Structural Variation

Conda recipes for the bioconda channel.

A Snakemake-based structural variant analysis workflow leveraging OctopusV's capabilities.

simple terminal UI for git commands

Structural variant and indel caller for mapped sequencing data

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

A python tool to detect internal tandem duplication with robust variant allele frequency estimation

Installation and usage for various tools for cancer genomics

SortMeRNA: next-generation sequence filtering and alignment tool

Language models identify chimeric artificial reads in NanoPore direct-RNA sequencing data.

Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data

Jasmine: SV Merging Across Samples

C++ Genomic Interval B+ Tree Library

Tool for the Quality Control of Long-Read Defined Transcriptomes

A comprehensive mapping database, including detailed information, of the terminology and concepts in computational medicine and bioinformatics field.

Deep Learning Processing Library for Biological Data

The break time reminder app

A very fast interval tree data structure

Vim-fork focused on extensibility and usability