AWS for Bioinformatics Researchers

A libre lightweight streaming front-end for Android.

This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.

K-mer substring space decomposition

A developer-friendly API for converting numerous document formats into PDF files, and more!

🔥 Turn entire websites into LLM-ready markdown or structured data. Scrape, crawl and extract with a single API.

The CSV magician

Unifying flow matching and diffusion on Riemannian manifolds and discrete spaces, for generative deep learning.

Python package to embed BCR sequences

An extension to the MDAnalysis library providing support for dealing with structural ensembles. There is currently support for calculating covariance matrices, ensemble similarities, entropy and co…

Collection of papers related to BCR repertoire analyses

Official repository for the Boltz biomolecular interaction models

A categorized collection of FFmpeg commands for video automation pipelines.

Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5

Code to perform clustering of antibody CDRs from predicted structures of sequences from the Observed Antibody Space.

Trainable PyTorch framework for developing protein, RNA and complex models.

Antibody Binding Mutational Database

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity

Finding the pitfalls of deep learning predictors of interacting residues in antibodies 🦠

Publication-quality sequence logos in R

An interactive cheatsheet tool for the command-line

📚 Collaborative cheatsheets for console commands

Improved antibody structure-based design using inverse folding

An interoperable Python framework for biomolecular simulation.

A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.