make is failed on gcc 10 #275
Description
Hello,
I am seeing that the bwa latest version 0.7.17 is failed to build on gcc 10.0.1.
$ gcc --version
gcc (GCC) 10.0.1 20200311 (Red Hat 10.0.1-0.9)
Copyright (C) 2020 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
My environment is Linux, Fedora 33 x86_64.
$ uname -m
x86_64
$ cat /etc/fedora-release
Fedora release 33 (Rawhide)
Here is the log.
$ make
...
gcc -g -Wall -Wno-unused-function -O2 -DHAVE_PTHREAD -DUSE_MALLOC_WRAPPERS bwashm.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o bwape.o kopen.o pemerge.o maxk.o bwtsw2_core.o bwtsw2_main.o bwtsw2_aux.o bwt_lite.o bwtsw2_chain.o fastmap.o bwtsw2_pair.o main.o -o bwa -L. -lbwa -lm -lz -lpthread -lrt
/usr/bin/ld: ./libbwa.a(rope.o):/builddir/build/BUILD/bwa-0.7.17/rle.h:33: multiple definition of `rle_auxtab'; ./libbwa.a(bwtindex.o):/builddir/build/BUILD/bwa-0.7.17/rle.h:33: first defined here
/usr/bin/ld: ./libbwa.a(rle.o):/builddir/build/BUILD/bwa-0.7.17/rle.h:33: multiple definition of `rle_auxtab'; ./libbwa.a(bwtindex.o):/builddir/build/BUILD/bwa-0.7.17/rle.h:33: first defined here
collect2: error: ld returned 1 exit status
make: *** [Makefile:30: bwa] Error 1
Could you fix it?
Thank you.