Lists (30)
authentication-web
1 repository
cfChIP-Seq
cell free ChIP-Seq analysis1 repository
CLI-rust-tools
1 repository
CLI-tools
DataViz
1 repository
Deep Learning 💻
5 repositories
dev-labs
3 repositories
🔬💻 Digital Pathlogy
Tools used in Digital Pathology8 repositories
epigenomics
1 repository
LLM-based-tools
2 repositories
long-read RNA-seq
1 repository
ML-feature-extraction
3 repositories
my-tools
Tools I use and contribute to3 repositories
project-env-management
1 repository
python-CLI-tools
CLI Tools written in Python1 repository
python-packaging
3 repositories
r-frameworks
3 repositories
R-Programming
1 repository
RNA-Seq
4 repositories
rust-bioinfo
3 repositories
scRNA-Seq
1 repository
Shell Scripting 🐚📃
3 repositories
Shiny-web
3 repositories
shinylive
1 repository
Spatial Methods
2 repositories
spatial-transcriptomics
1 repository
static-site-generator
1 repository
urssi-summer-2025
5 repositories
web-dev
1 repository
Zig-Tools
Starred repositories
ssh + reverse sshfs + port forwarder, in Docker-like CLI (predecessor of Lima)
A Python library for extracting structured information from unstructured text using LLMs with precise source grounding and interactive visualization.
An implementation of chunked, compressed, N-dimensional arrays for Python.
A lightweight and high-performance reverse proxy for NAT traversal, written in Rust. An alternative to frp and ngrok.
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
General-purpose programming language and toolchain for maintaining robust, optimal, and reusable software.
Reading, writing, and processing images in a wide variety of file formats, using a format-agnostic API, aimed at VFX applications.
Collection of useful (to me) python scripts for interacting with napari
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
A template repository for Python projects
Python packaging class material for August 2025 school in Fairbanks.
Python testing class material for August 2025 school in Fairbanks.
A collection of widgets intended to serve any person seeking to process microscopy images from start to finish, with no coding necessary. napari-ndev was designed to address the gap between the nap…
PR Practice Repository for URSSI Summer School on Research Software and Open Science, August 2025, Alaska Satellite Facility, University of Alaska Fairbanks