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Commits on Mar 18, 2024

• Avoid conflicting with HTSlib's kstring.c functions

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Commits on Sep 22, 2022

• Merge pull request #367 from martin-g/github-actions-linux-aarch64

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Commits on Sep 1, 2022

• Add CI job for Ubuntu 20.04 aarch64

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Commits on Aug 31, 2022

• Merge pull request #359 from jmarshall/neon

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Commits on Jun 27, 2022

• Use native SSE2 intrinsics on i386 as well as x86-64

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Commits on Jun 26, 2022

• On other platforms, emulate SSE2 SIMD calls using scalar code

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Commits on Jun 20, 2022

• On ARM, rewrite SSE2 SIMD calls using Neon intrinsics

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Commits on Jun 17, 2022

• Make _mm_load_si128() explicit

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Commits on Jun 3, 2022

• Merge pull request #355 from clintval/cv_document_new_XB

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Commits on May 19, 2022

• Document that the XB tag now contains the mapping quality too

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Commits on Mar 7, 2022

• Merge pull request #263 from jmarshall/std-vars

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• Use $CPPFLAGS and $LDFLAGS if they are set

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Commits on Mar 6, 2022

• Merge branch 'fulcrumgenomics-feature/add-xa-drop-ratio-option'

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• Merge branch 'feature/add-xa-drop-ratio-option' of https://github.com/fulcrumgenomics/bwa into fulcrumgenomics-feature/add-xa-drop-ratio-option

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• Merge pull request #293 from nh13/patch-2

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• Merge pull request #292 from nh13/patch-1

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• Merge pull request #297 from nh13/patch-3

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• Merge pull request #330 from nh13/patch-4

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• Merge pull request #336 from nh13/patch-5

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• Merge pull request #343 from nh13/patch-7

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Commits on Feb 18, 2022

• Update bwa.1

  nh13

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Commits on Dec 14, 2021

• Add the header line to the output SAM

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Commits on Jul 21, 2021

• Add the mate mapping quality tag

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Commits on May 10, 2021

• fixed wrong Markdown format in README

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• updated to Github CI status

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• Merge pull request #325 from jmarshall/ci

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Commits on May 9, 2021

• Convert Travis CI to GitHub Actions

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Commits on Apr 22, 2021

• added code of conduct

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Commits on Mar 9, 2021

• Removed the debug output; resolves #320

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• deprecate bwasw

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Commits on Feb 23, 2021

• output more memory information

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• debug flag to measure memory

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Commits on Aug 19, 2020

• Clarify bwa mem -5 option

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  nh13

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Commits on Aug 12, 2020

• allow the user to specify the XA drop ratio via the -z option

  nh13

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• Update fastmap.c

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