Added in HTML output for scan command, version checking in rules config

Fixing "find" to use ini_get

Updated in this version:

- bugfixes
- first steps of new "info" command
- added specific check for CVE-2013-1635
- addition of PHP version command line argument

Updated in this version:

- added register_long_arrays to the deprecated set
- addition of global (Composer) install instructions
- new "threshold" command line option
- instructions and features to build standalone phar with Box.com

Added "fix" command (early stages) and other bugfixes

added deprecated checking based on rules config

added lots more new checks and contributed fixes

now checking for additional ini settings at runtime

added the concept of "contexts" (ex. prod or dev) for rules

added alternate output handling