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1. onecodex/onecodex onecodex/onecodex Public

   Command line interface and Python client library for the One Codex API

   Python 23 12

2. qiime2/qiime2 qiime2/qiime2 Public

   Source for the QIIME 2 Framework (Q2F).

   Python 516 258

3. qiime2/q2cli qiime2/q2cli Public

   Command line interface for QIIME 2

   Python 19 28

4. scikit-bio/scikit-bio scikit-bio/scikit-bio Public

   scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

   Python 983 284

5. qiime2/Keemei qiime2/Keemei Public

   Validate tabular bioinformatics file formats in Google Sheets

   JavaScript 5 20

6. biocore/qiime biocore/qiime Public archive

   Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

   Python 285 261