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Commits on Sep 6, 2021

• Added pypi link to README

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• Removed precompiled testdata and updated testing

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• Update .travis.yml

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• Preperatations for PyPi upload (name change to tadacnv)

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• Bump to v1.0.0

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• Updated dependecy versions

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• Updated the Deletion and Duplication model + slight changes to cnv annotation

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Commits on May 10, 2021

• Updated dependencies

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• Fixed error during loading process of preannotated data

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Commits on Feb 2, 2021

• Added ClinVar and manuscript datasets and updated README

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• Second update for the TADA workflow figure

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• TADA workflow update

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• Modifed README to clarify config file usage

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Commits on Jan 6, 2021

• Removed CNV paths from default config

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Commits on Nov 16, 2020

• Merge pull request #3 from jakob-he/dev

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• Update TRAVIS config

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• Added specific version to setup dependencies and adjusted tests/models accordingly

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Commits on Jul 31, 2020

• Merge pull request #2 from jakob-he/dev

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• Minor format fix to the README

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• Minor changes to the README

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Commits on Jun 24, 2020

• Minor changes to the annotation process and added manuscript data

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Commits on May 22, 2020

• Create LICENSE

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Commits on May 21, 2020

• Merge pull request #1 from jakob-he/dev

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• Updated Requirements

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• Minor Change to the TRAVIS file

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• Added new Annotation Data and Pretrained Models

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• TADA 0.2: Major Changes to the Pipeline and Test Procedure

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Commits on Apr 9, 2020

• Config based Input Structure

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Commits on Mar 18, 2020

• Added changed feature computation and visualization

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Commits on Jan 31, 2020

• Added parameter tuning, feature importance by permutation and additonal plotting

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Commits on Nov 27, 2019

• Seperated the feature composition into multiple try loops

  

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• Extended VCF support

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Commits on Nov 22, 2019

• Adapted predict_variants script to scikitlean pipeline

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• Added conda envronment file

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• Added new plotting functions and trained deletion model

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