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Investigate adding pMHCchat as an additional binding prediction tool

Status: Open.

#1269 In griffithlab/pVACtools;

· ksinghal28 opened on Jul 15, 2025

Filter out transcript with incomplete CDS 5' and/or 3'

Status: Open.

#1264 In griffithlab/pVACtools;

· susannasiebert opened on Jul 3, 2025

Request for Clarification on Rank Discrepancies and Updated Neoantigen Reference from pVACseq Pipeline

Status: Open.

#1262 In griffithlab/pVACtools;

· bioaman opened on Jul 3, 2025

Sorting on the IC50/%ile WT columns should be numerical, not string sorting.

pVACview

Status: Open.

#1257 In griffithlab/pVACtools;

· susannasiebert opened on Jun 25, 2025

Allow filtering and sorting on the Acpt/Rev/Rej columns in pVACview

pVACview

Status: Open.

#1256 In griffithlab/pVACtools;

· susannasiebert opened on Jun 25, 2025

Add a command to create a colored ordering TXT/DOC file for DNA vectors

Status: Open.

#1251 In griffithlab/pVACtools;

· susannasiebert opened on Jun 18, 2025

Running pVACSeq on multiple samples

Status: Open.

#1246 In griffithlab/pVACtools;

· xiw588 opened on Jun 3, 2025

Allow users to set whether to prioritize ic50 or percentile scores

Status: Open.

#1244 In griffithlab/pVACtools;

· susannasiebert opened on May 28, 2025

Add additional info to pvacsplice aggregate report

Status: Open.

#1239 In griffithlab/pVACtools;

· mhoang22 opened on May 23, 2025

Incorporate gene of interest status in the aggregate tiering/sorting

Status: Open.

#1230 In griffithlab/pVACtools;

· susannasiebert opened on Apr 9, 2025

· 

5.5.0

Output files should include mhc_i/mhc_ii/combined

Status: Open.

#1221 In griffithlab/pVACtools;

· susannasiebert opened on Mar 13, 2025

· 

6.0

Explain in documentation how the aggregate report is sorted

aggregate report

documentation

Status: Open.

#1214 In griffithlab/pVACtools;

· susannasiebert opened on Mar 4, 2025