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Arc Virtual Cell Atlas
Code for the ProteinMPNN paper
Use PEFT or Full-parameter to CPT/SFT/DPO/GRPO 500+ LLMs (Qwen3, Qwen3-MoE, Llama4, GLM4.5, InternLM3, DeepSeek-R1, ...) and 200+ MLLMs (Qwen3-VL, Qwen3-Omni, InternVL3.5, Ovis2.5, Llava, GLM4v, Ph…
This repo contains the 10x Genomic datasets filtered using ATRAP and ICON denoising frameworks.
NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identify specificity groups in the T cell receptor repertoire base…
This script use to analyze the immune repertoire sequenced by high throughtput sequencing
A deep-dive on the entire history of deep-learning
Unconstrained lattice antibody-antigen bindings generator
TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction
Large language modeling applied to T-cell receptor (TCR) sequences.
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
Predicting protein structure through sequence modeling
Reworked clustering metrics for assessing performance in imbalanced settings
Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
GPU accelerated combinatorial peptide library peptide scanning
Making Protein folding accessible to all!
Antibody Numbering and Antigen Receptor ClassIfication
SPECTRA: Spectral framework for evaluation of biomedical AI models
Bayesian inference of Activation of TCR by Mutant Antigens
TSpred: a robust prediction framework for TCR-epitope interactions using paired chain TCR sequence data
A generative model for programmable protein design
Utilizing single-cell omics from patients tumor to predict response and resistance.