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1. ccmbioinfo/ccm_benchmate ccmbioinfo/ccm_benchmate Public

   A knowledge aggregator for computational biology

   Jupyter Notebook 5 1

2. create a refflat for picard rnaseqme... create a refflat for picard rnaseqmetrict from txdb

   1

   library(optparse)

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   3

   option_list <- list( 

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     make_option(c("-g", "--gtf"), action="store", help="gtf file to use"),

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     make_option(c("-r", "--refflat"), action="store", help="refflat output"),

3. parse_pileup parse_pileup Public

   Parse pileup files, generate consensus fasta and calculate heteroplasmy per nucleotide

   Python 1

4. video_parser video_parser Public

   parse gut slice videos frame by frame into excel with object or movement tracking

   Python 3

5. ccmbioinfo/ccm_vignettes ccmbioinfo/ccm_vignettes Public

   Some vignettes for newcomes to bioniformatics

   Jupyter Notebook