Stars
List of ngrok/Cloudflare Tunnel alternatives and other tunneling software and services. Focus on self-hosting.
Blazing-Fast Bioinformatic Operations on Python DataFrames
A collection of unexpected challenges and learnings with nextflow and nf-core.
Container class to represent genomic locations and support genomic analysis
WebAssembly powered code blocks and exercises for both the R and Python languages in Quarto documents
「漢字標準格式」印刷品般的漢字排版框架 Han.css: the CSS typography framework optimised for Hanzi.
Integrative Composable Visualization Framework for ggplot2
Learning the Sequence Alignment/Map format
Work with bioinformatic files using Arrow, Polars, and/or DuckDB
A terminal spreadsheet multitool for discovering and arranging data
Modern Jupyter server based on FastAPI
Immuological gene typing and annotation for genome assembly
Interactive bioinformatics tutorials
A Rust library and command line tool for working with genomic ranges and their data.
More efficient tidyverse code, using polars in the background
T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.
PyPy is a very fast and compliant implementation of the Python language.
🔬 Path to a free self-taught education in Bioinformatics!
Read-based phasing of genomic variants, also called haplotype assembly
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction