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Commits on Sep 19, 2025

• Update pyproject.toml

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• loosen pandas dependency requirements

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• add celloracle example and loosened pandas dependency

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Commits on Sep 7, 2025

• Update sphinx root path to be recognised by rtd

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• Update requirements.txt

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• add myst_nb dependency for notebook rendering

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• update path to sphinx conf.py

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• Merge branch 'main' of github.com:cantinilab/Circe

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• add structure readthedocs website

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Commits on Sep 6, 2025

• Update codecov.yaml

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• updated extract_atac_links to not depend on coo_matrix anymore --> needed for anndata>=0.12

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• updated dependencies to keep anndata < 0.12

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• updated the structure of the repo by creating utils.py

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Commits on Sep 4, 2025

• Update conf.py

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• Update conf.py

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• Update .readthedocs.yaml

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• Update .readthedocs.yaml

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• Update .readthedocs.yaml

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• Update .readthedocs.yaml

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• Update .readthedocs.yaml

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• Create requirements.txt

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• Update .readthedocs.yaml

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• Update .readthedocs.yaml

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• Update .readthedocs.yaml

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• Update conf.py

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• Delete docs/modules.rst

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• Update .readthedocs.yaml

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• Create modules.rst

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• Create index.rst

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• Update .readthedocs.yaml

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• Rename docs/source/conf.py to docs/conf.py

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• Create conf.py

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• Update .readthedocs.yaml

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• Create .readthedocs.yaml

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Commits on Jun 25, 2025

• Bump to version 0.3.8 !

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