Major changes:

• The Micro-Manager OME-TIFF/NDTIFF and ClearControl readers have been migrated to use the unified FOV-mapping API.
• The single-page TIFF and PTI readers has been deprecated.
• OME-Zarr nodes and models have been moved into the ngff module.

0.2 be the last minor version to support zarr-python v2. Zarr-python v3 will be required for 0.3 to support Zarr format v3.

What's Changed

• Inheriting BaseFOV on ClearControlFOV by @JoOkuma in #148
• Universal API implementations for Micro-Manager OME-TIFF and NDTiff by @ziw-liu in #185
• Fix bug determining number of rows and cols by @ieivanov in #214
• Fix bug reading dragonfly acquisitions by @ieivanov in #215
• Sort keys in metadata .json files by @ieivanov in #211
• Add CITATION.cff by @ziw-liu in #219
• Modify warning by @ieivanov in #220
• Add Y5 to orange display color group by @ziw-liu in #224
• Fix README examples link by @talonchandler in #225
• UAPI docs update by @ziw-liu in #223
• Unified API for Micro-manager readers by @ieivanov in #222
• Fix docs switcher path by @ziw-liu in #227
• Refactor NGFF module and migrate to Pydantic v2 by @ziw-liu in #233
• Fixing pyramid scaling factor by @JoOkuma in #238
• Use annotation instead of field for tagged union by @ziw-liu in #244
• Export ImageArray from the ngff module by @edyoshikun in #245
• set-scale utility by @aaronalvarezcz in #228
• Porting create_empty_zarr to iohub by @edyoshikun in #234
• Fix well naming case mismatch bug by @ieivanov in #254
• Fixing tests for process_single_position_setup() by @edyoshikun in #252
• rename-wells CLI utility by @josephschull in #232
• Limit action runners by @ziw-liu in #246
• Add decompressed OME-Zarr dataset size to iohub info by @edyoshikun in #248
• Support falcon datasets with latest micromanager by @talonchandler in #237
• Remove BOM from well name by @ieivanov in #259
• Add conversion of ImageArray to dask by @ieivanov in #262
• More robust calculation of "z-step_um" for ndtiff datasets by @ieivanov in #263
• add support for the get_transform analog to set_transform by @pattonw in #264
• Make sure converter output dir ends in .zarr by @ieivanov in #269
• Fix reading Dragonfly non-OpenCell datasets with incomplete metadata by @ziw-liu in #268
• Compare MM FOVs by @ziw-liu in #276
• Set contrast limits method by @edyoshikun in #279
• Check overwrite path by @ziw-liu in #280
• Authenticate NDTIFF download in CI by @ziw-liu in #281
• Fix test combine FOVs by @ziw-liu in #283
• make nodes.Position.metadata.omero an optional attribute by @yuriyzubov in #284
• Bump supported python range to 3.11-3.13 by @ziw-liu in #277
• Correctly name copied Position in Plate.from_positions by @ieivanov in #256
• Support metadata for .zarr converted from .nd2 using bioformats2raw conversion by @talonchandler in #272
• Set default pixel size for old NDTiff format by @ziw-liu in #285
• Filter test file names on windows by @ziw-liu in #286
• Use sphinx-polyversion by @ziw-liu in #274
• Remove fetching step in build docs action by @ziw-liu in #289
• Set scale for any coordinate transform by @ziw-liu in #287
• Update deploy pages action by @ziw-liu in #290
• Handle case-insensitive platforms in Zarr hierarchy by @ziw-liu in #291

New Contributors

• @aaronalvarezcz made their first contribution in #228
• @josephschull made their first contribution in #232
• @pattonw made their first contribution in #264
• @yuriyzubov made their first contribution in #284

Full Changelog: v0.1.0...v0.2.0