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Error With Bam file Creation

Status: Open.

#97 In brentp/bwa-meth;

· shwetaJones opened on Oct 21, 2024

ERROR! Unable to open the file: */GRCh38.p7.genome.fa.bwameth.c2t.bwt.2bit.64

Status: Open.

#96 In brentp/bwa-meth;

· Wong718 opened on Oct 10, 2024

YC and YD tags

Status: Open.

#94 In brentp/bwa-meth;

· YettaWang opened on Jul 3, 2024

Overriding hardcoded -B values is possible from command line

Status: Open.

#92 In brentp/bwa-meth;

· edawson opened on Feb 12, 2024

Exception("bad or empty fastqs")

Status: Open.

#91 In brentp/bwa-meth;

· kea027 opened on Jan 24, 2024

BWA-meth mapping issues

Status: Open.

#90 In brentp/bwa-meth;

· alirazzaq254 opened on Dec 31, 2023

Meet Error When running bwa meth mem2

Status: Open.

#84 In brentp/bwa-meth;

· WRui opened on Aug 10, 2022

Timestamp checking of .fa files prevents me from running bwa-meth in the cloud

Status: Open.

#83 In brentp/bwa-meth;

· jnthnhss opened on Aug 4, 2022

Unique mapped reads

Status: Open.

#81 In brentp/bwa-meth;

· Hongxiang2023 opened on May 10, 2022

Methylcaller alternatives to recommended MethylDackel

Status: Open.

#67 In brentp/bwa-meth;

· Blosberg opened on Sep 22, 2020

MAPQ0 due to secondary alignment in alt contigs

Status: Open.

#65 In brentp/bwa-meth;

· yangruialex opened on Dec 11, 2019

raise BWAMethException("first run bwameth.py index %s" % fa)

Status: Open.

#64 In brentp/bwa-meth;

· sengoku93 opened on Aug 14, 2019